Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GFC28_RS17485 Genome accession   NZ_CP015435
Coordinates   3607294..3609651 (+) Length   785 a.a.
NCBI ID   WP_044744637.1    Uniprot ID   A0A167TXI5
Organism   Anoxybacillus sp. B2M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3602294..3614651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC28_RS17460 (GFC28_3587) - 3603173..3603811 (+) 639 WP_044744642.1 YitT family protein -
  GFC28_RS17465 (GFC28_3588) - 3603822..3604238 (+) 417 WP_044744641.1 Rrf2 family transcriptional regulator -
  GFC28_RS17470 (GFC28_3589) - 3604262..3605407 (+) 1146 WP_044744640.1 cysteine desulfurase family protein -
  GFC28_RS17475 (GFC28_3590) mnmA 3605420..3606535 (+) 1116 WP_044744639.1 tRNA 2-thiouridine(34) synthase MnmA -
  GFC28_RS17480 (GFC28_3591) - 3606612..3607274 (+) 663 WP_044744638.1 tetratricopeptide repeat protein -
  GFC28_RS17485 (GFC28_3592) recD2 3607294..3609651 (+) 2358 WP_044744637.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GFC28_RS17490 (GFC28_3593) - 3609758..3609949 (+) 192 WP_044744703.1 hypothetical protein -
  GFC28_RS19040 (GFC28_3594) - 3609971..3610105 (+) 135 WP_172798665.1 DUF3918 family protein -
  GFC28_RS17495 (GFC28_3595) - 3610210..3611256 (+) 1047 WP_156487588.1 AI-2E family transporter -
  GFC28_RS17500 (GFC28_3596) alaS 3611585..3614221 (+) 2637 WP_044744635.1 alanine--tRNA ligase -
  GFC28_RS17505 (GFC28_3597) - 3614295..3614552 (+) 258 WP_044744634.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88546.29 Da        Isoelectric Point: 5.0749

>NTDB_id=179698 GFC28_RS17485 WP_044744637.1 3607294..3609651(+) (recD2) [Anoxybacillus sp. B2M1]
MQQQESWALGEKSFIKGTHIVTIFHNESNLYSVVRIHVEETNEGYDEQEVVVTGYFPRMNEHDVYVFYGAFKDHPRFGRQ
YVAEYFRKEMPQTKEGLIYYLSSDLFKGIGKKTAEQIVEALGDQAISVILADPEALAKVPKLPKNKAKELYETLKEHQGL
EQIMIALSQFGFGPQLSMKIYQVYKEAALDVIQKNPYQLVEDVEGIGFRRADELGQQLGLSGSHPDRVRAACLYVIESDC
LQEGHVYVTKEQLLFKAKQLLESKRGEDIPPDMIERELLDLAKEEKVIHEDGRFYIPTLYFAEKGIITNIKRLLEQKVTR
FPEAEFLLALGRLEERLDVQYGPLQKEAIQQAISSPLFILTGGPGTGKTTVIKGIVEIFADLHGVSLDPKDYHKENPFPI
LLAAPTGRAAKRMSEATGLPAMTIHRLLGYNAAEGFTHHEDEPIEGNLLIVDEMSMVDTWLANQLLKSLPTGMQVILVGD
EDQLPSVGPGQVLKDLLKTSRIPTIRLTEVYRQAEGSSIIELAHCMKKGELPADLSSPKTDRSFIRCKAEQVVDVVRQIA
DNAWKKGYSVKDIQVLAPMYRGPAGIDRLNRTLQELFNPKSPQKRELSSGETVYRVGDKVLQLVNQPDQNVFNGDIGEIV
AIFYAKENTEQQDLVVVSFDGNEVTYTRQDLTQITHAYCCSIHKAQGSEFPIVILPVVKSYYRMLQRNLLYTAVTRSKKF
LILCGEEEAFRIGTARCDDGVRQTTLAEKIQQLFEPADETELPLDDAGIGMENVSPYDFMIEETK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=179698 GFC28_RS17485 WP_044744637.1 3607294..3609651(+) (recD2) [Anoxybacillus sp. B2M1]
TTGCAGCAGCAAGAATCATGGGCGTTAGGGGAAAAATCGTTTATTAAAGGGACGCATATCGTCACTATTTTTCATAACGA
AAGTAACCTTTATTCCGTGGTCCGCATTCACGTTGAAGAAACGAATGAAGGGTATGACGAGCAAGAGGTTGTTGTAACTG
GATATTTCCCGCGTATGAACGAACATGATGTTTATGTGTTTTACGGCGCTTTTAAAGATCACCCCAGATTTGGACGGCAA
TATGTAGCCGAGTATTTTCGAAAAGAAATGCCGCAAACAAAGGAAGGGTTGATCTATTATTTATCGAGCGATTTGTTTAA
GGGGATCGGAAAGAAAACAGCGGAACAAATTGTGGAAGCGCTCGGGGACCAAGCGATTTCAGTGATACTAGCAGATCCGG
AAGCGCTCGCGAAAGTGCCTAAGCTTCCGAAAAACAAAGCGAAAGAGCTATACGAAACGTTAAAGGAGCACCAAGGCCTT
GAACAAATTATGATTGCTCTTTCTCAGTTCGGCTTTGGTCCGCAGCTGTCAATGAAAATTTACCAAGTATATAAAGAAGC
TGCACTTGATGTCATTCAAAAAAATCCGTATCAGCTTGTCGAGGATGTAGAAGGGATTGGGTTTCGGCGAGCCGATGAGT
TAGGCCAGCAGCTCGGCCTTTCCGGCAGCCATCCAGATCGTGTCCGAGCCGCCTGTTTATATGTCATCGAAAGCGATTGT
TTGCAAGAGGGGCATGTATATGTGACAAAAGAACAGTTGCTTTTTAAAGCTAAGCAGCTGCTTGAATCGAAAAGAGGAGA
GGACATTCCTCCTGACATGATTGAGCGTGAACTGCTTGATCTAGCCAAAGAGGAAAAAGTCATTCATGAAGATGGCCGCT
TTTATATTCCGACTCTTTACTTTGCGGAAAAAGGAATCATCACTAATATAAAGCGCCTGCTTGAACAAAAGGTAACAAGA
TTTCCAGAAGCGGAATTTTTGCTGGCGCTCGGCCGGTTGGAGGAGCGGTTGGATGTACAATATGGCCCGTTGCAAAAGGA
AGCGATTCAACAAGCGATTTCTTCCCCTCTGTTTATTTTGACAGGCGGGCCGGGAACGGGAAAAACGACGGTGATAAAAG
GGATTGTGGAGATTTTTGCCGACCTCCACGGCGTTTCGCTTGACCCGAAGGATTATCATAAAGAAAATCCTTTTCCGATT
TTGCTTGCTGCGCCAACTGGGAGAGCCGCAAAACGAATGAGCGAAGCGACAGGATTACCAGCGATGACGATCCATCGTTT
ACTTGGTTATAATGCTGCAGAAGGATTTACTCATCATGAAGATGAACCGATTGAAGGAAATTTGCTCATTGTCGATGAAA
TGTCCATGGTGGACACATGGCTAGCTAACCAATTGCTGAAGTCCCTTCCAACTGGTATGCAAGTCATTTTGGTCGGTGAT
GAGGATCAATTGCCGTCAGTCGGACCGGGGCAAGTATTAAAGGATTTGTTAAAAACGTCGCGAATTCCTACTATTCGCTT
GACAGAAGTATATCGTCAAGCAGAAGGATCCTCCATCATTGAATTGGCCCATTGTATGAAAAAAGGGGAGCTTCCTGCTG
ATCTAAGCTCTCCGAAAACAGACCGTTCCTTTATTCGCTGTAAAGCTGAACAAGTGGTTGATGTCGTGAGGCAAATTGCT
GATAATGCGTGGAAAAAAGGATATTCGGTAAAAGATATTCAAGTGCTCGCCCCGATGTATCGCGGTCCTGCCGGCATCGA
TCGTCTCAATCGAACGCTTCAAGAGCTGTTTAATCCAAAATCGCCACAAAAGCGCGAGCTGTCCAGCGGCGAAACGGTTT
ATCGCGTTGGCGATAAGGTGTTGCAGCTTGTCAATCAACCGGATCAAAATGTGTTTAATGGCGATATTGGTGAAATTGTC
GCCATCTTTTACGCGAAAGAAAATACGGAACAGCAGGACTTGGTTGTCGTATCCTTTGATGGAAACGAAGTCACTTATAC
AAGACAGGATTTAACACAAATTACCCACGCTTACTGCTGTTCGATTCATAAGGCGCAGGGCAGTGAATTTCCGATTGTGA
TTTTGCCGGTGGTGAAAAGCTATTATCGAATGCTACAGCGGAATTTGTTATATACAGCGGTGACAAGAAGCAAAAAATTT
TTAATTTTATGCGGTGAGGAGGAAGCTTTTCGCATCGGAACGGCACGCTGTGATGACGGGGTGAGGCAAACGACATTAGC
TGAAAAAATTCAACAGCTGTTTGAGCCTGCTGATGAAACGGAGCTGCCGTTAGATGATGCGGGGATCGGGATGGAAAACG
TTTCACCGTATGACTTTATGATAGAAGAAACAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-658)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A167TXI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.93

100

0.618

Multiple sequence alignment