Detailed information NTG0178927

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AS891_RS15315
• Genome accession: NZ_CP015375
• Coordinates: 2916945..2917724 (-)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain KCTC 3135
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 2911945..2922724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AS891_RS15285 (AS891_15280)	fliH	2911963..2912715 (-)	753	WP_003244804.1	flagellar assembly protein FliH	-
AS891_RS15290 (AS891_15285)	fliG	2912708..2913724 (-)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
AS891_RS15295 (AS891_15290)	fliF	2913737..2915347 (-)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
AS891_RS15300 (AS891_15295)	fliE	2915393..2915713 (-)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
AS891_RS15305 (AS891_15300)	flgC	2915724..2916176 (-)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
AS891_RS15310 (AS891_15305)	flgB	2916176..2916565 (-)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
AS891_RS15315 (AS891_15310)	codY	2916945..2917724 (-)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AS891_RS15320 (AS891_15315)	hslU	2917764..2919167 (-)	1404	WP_003245556.1	HslU--HslV peptidase ATPase subunit	-
AS891_RS15325 (AS891_15320)	clpQ	2919184..2919729 (-)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
AS891_RS15330 (AS891_15325)	xerC	2919742..2920656 (-)	915	WP_003231988.1	tyrosine recombinase XerC	-
AS891_RS15335 (AS891_15330)	trmFO	2920724..2922031 (-)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=178927 AS891_RS15315 WP_003220850.1 2916945..2917724(-) (codY) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=178927 AS891_RS15315 WP_003220850.1 2916945..2917724(-) (codY) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467