Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Aba3207_RS09875 Genome accession   NZ_CP015364
Coordinates   2010819..2011460 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain 3207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2005819..2016460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba3207_RS09855 (Aba3207_09850) aroK 2006735..2007304 (-) 570 WP_000643712.1 shikimate kinase AroK -
  Aba3207_RS09860 (Aba3207_09855) pilQ 2007316..2009481 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  Aba3207_RS09865 (Aba3207_09860) pilP 2009544..2010071 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  Aba3207_RS09870 (Aba3207_09865) pilO 2010082..2010822 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  Aba3207_RS09875 (Aba3207_09870) pilN 2010819..2011460 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  Aba3207_RS09880 (Aba3207_09875) pilM 2011460..2012518 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  Aba3207_RS09885 (Aba3207_09880) ponA 2012680..2015235 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  Aba3207_RS09890 (Aba3207_09885) - 2015253..2016077 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  Aba3207_RS09895 (Aba3207_09890) - 2016080..2016412 (-) 333 WP_000169599.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=178826 Aba3207_RS09875 WP_000201227.1 2010819..2011460(-) (pilN) [Acinetobacter baumannii strain 3207]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=178826 Aba3207_RS09875 WP_000201227.1 2010819..2011460(-) (pilN) [Acinetobacter baumannii strain 3207]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCT
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment