Detailed information
Bioinformatically predicted
Overview
| Name | xcpW | Type | Machinery gene |
| Locus tag | Aba3207_RS00430 | Genome accession | NZ_CP015364 |
| Coordinates | 83368..84069 (+) | Length | 233 a.a. |
| NCBI ID | WP_000594590.1 | Uniprot ID | A0A427R546 |
| Organism | Acinetobacter baumannii strain 3207 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 78891..135341 | 83368..84069 | within | 0 |
Gene organization within MGE regions
Location: 78891..135341
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Aba3207_RS00395 (Aba3207_00395) | kdsB | 78891..79652 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| Aba3207_RS00400 (Aba3207_00400) | - | 79664..80644 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| Aba3207_RS00405 (Aba3207_00405) | - | 80656..80997 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| Aba3207_RS00410 (Aba3207_00410) | - | 81015..81788 (+) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| Aba3207_RS00415 (Aba3207_00415) | - | 81826..82434 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| Aba3207_RS00420 (Aba3207_00420) | - | 82444..82998 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| Aba3207_RS00425 (Aba3207_00425) | xcpV | 82988..83368 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| Aba3207_RS00430 (Aba3207_00430) | xcpW | 83368..84069 (+) | 702 | WP_000594590.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| Aba3207_RS00435 (Aba3207_00435) | gspK | 84069..85028 (+) | 960 | WP_000301471.1 | type II secretion system minor pseudopilin GspK | - |
| Aba3207_RS00440 (Aba3207_00440) | - | 85259..85855 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| Aba3207_RS00445 (Aba3207_00445) | ung | 85906..86619 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| Aba3207_RS00450 (Aba3207_00450) | - | 86616..87740 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| Aba3207_RS00455 (Aba3207_00455) | tadA | 87747..88250 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
| Aba3207_RS00460 (Aba3207_00460) | - | 88320..88763 (+) | 444 | WP_001246674.1 | SRPBCC family protein | - |
| Aba3207_RS00465 (Aba3207_00465) | cmk | 88771..89457 (+) | 687 | WP_000218018.1 | (d)CMP kinase | - |
| Aba3207_RS00470 (Aba3207_00470) | rpsA | 89562..91235 (+) | 1674 | WP_000140309.1 | 30S ribosomal protein S1 | - |
| Aba3207_RS00475 (Aba3207_00475) | - | 91392..91694 (+) | 303 | WP_000205997.1 | integration host factor subunit beta | - |
| Aba3207_RS00480 (Aba3207_00480) | - | 91719..92084 (+) | 366 | WP_001269278.1 | lipopolysaccharide assembly protein LapA domain-containing protein | - |
| Aba3207_RS00485 (Aba3207_00485) | pyrF | 92251..92949 (+) | 699 | WP_000392928.1 | orotidine-5'-phosphate decarboxylase | - |
| Aba3207_RS00490 (Aba3207_00490) | - | 92946..93857 (-) | 912 | WP_001190749.1 | lysine exporter LysO family protein | - |
| Aba3207_RS00495 (Aba3207_00495) | - | 93907..95454 (-) | 1548 | WP_086241959.1 | flavin-containing monooxygenase | - |
| Aba3207_RS00500 (Aba3207_00500) | - | 95576..96595 (+) | 1020 | WP_000830352.1 | helix-turn-helix domain-containing protein | - |
| Aba3207_RS00505 (Aba3207_00505) | zapE | 96679..97821 (+) | 1143 | WP_063558475.1 | cell division protein ZapE | - |
| Aba3207_RS00510 (Aba3207_00510) | - | 97998..98957 (+) | 960 | WP_000190203.1 | tyrosine-type recombinase/integrase | - |
| Aba3207_RS00515 (Aba3207_00515) | - | 98923..99174 (-) | 252 | WP_000141159.1 | hypothetical protein | - |
| Aba3207_RS00520 (Aba3207_00520) | - | 99171..99458 (-) | 288 | WP_000813001.1 | hypothetical protein | - |
| Aba3207_RS00525 (Aba3207_00525) | - | 99461..100223 (-) | 763 | Protein_103 | Bro-N domain-containing protein | - |
| Aba3207_RS00530 (Aba3207_00530) | - | 100223..100591 (-) | 369 | WP_000038836.1 | hypothetical protein | - |
| Aba3207_RS00535 (Aba3207_00535) | - | 100596..101069 (-) | 474 | WP_000735880.1 | hypothetical protein | - |
| Aba3207_RS00540 (Aba3207_00540) | - | 101072..101308 (-) | 237 | WP_000148740.1 | hypothetical protein | - |
| Aba3207_RS00545 (Aba3207_00545) | - | 101292..101771 (-) | 480 | WP_001260744.1 | hypothetical protein | - |
| Aba3207_RS00550 (Aba3207_00550) | - | 101774..102505 (-) | 732 | WP_001071959.1 | hypothetical protein | - |
| Aba3207_RS00555 (Aba3207_00555) | - | 102755..103447 (-) | 693 | WP_006581783.1 | S24 family peptidase | - |
| Aba3207_RS00560 (Aba3207_00560) | - | 103576..103761 (+) | 186 | WP_002028116.1 | hypothetical protein | - |
| Aba3207_RS00565 (Aba3207_00565) | - | 103820..104116 (+) | 297 | WP_001005277.1 | hypothetical protein | - |
| Aba3207_RS00570 (Aba3207_00570) | - | 104116..104982 (+) | 867 | WP_006581784.1 | YdaU family protein | - |
| Aba3207_RS00575 (Aba3207_00575) | - | 104982..106313 (+) | 1332 | WP_078207603.1 | replicative DNA helicase | - |
| Aba3207_RS00580 (Aba3207_00580) | - | 106310..106588 (+) | 279 | WP_000846970.1 | hypothetical protein | - |
| Aba3207_RS00585 (Aba3207_00585) | - | 106585..106908 (+) | 324 | WP_000018482.1 | hypothetical protein | - |
| Aba3207_RS00590 (Aba3207_00590) | - | 106905..107399 (+) | 495 | WP_001086184.1 | hypothetical protein | - |
| Aba3207_RS00595 (Aba3207_00595) | - | 107465..108361 (+) | 897 | WP_063558476.1 | hypothetical protein | - |
| Aba3207_RS20595 | - | 108651..108824 (+) | 174 | WP_000131182.1 | hypothetical protein | - |
| Aba3207_RS21030 | - | 108813..108953 (-) | 141 | WP_000445668.1 | hypothetical protein | - |
| Aba3207_RS00600 (Aba3207_00600) | - | 109196..109595 (+) | 400 | Protein_120 | hypothetical protein | - |
| Aba3207_RS00605 (Aba3207_00605) | - | 109611..110141 (+) | 531 | WP_000433061.1 | hypothetical protein | - |
| Aba3207_RS00610 (Aba3207_00610) | - | 110131..110355 (+) | 225 | WP_000093656.1 | hypothetical protein | - |
| Aba3207_RS00615 (Aba3207_00615) | - | 110361..110651 (+) | 291 | WP_000612454.1 | hypothetical protein | - |
| Aba3207_RS19820 | - | 110581..110880 (+) | 300 | WP_029642315.1 | HNH endonuclease | - |
| Aba3207_RS00620 (Aba3207_00620) | - | 110877..111080 (+) | 204 | WP_000007392.1 | hypothetical protein | - |
| Aba3207_RS00625 (Aba3207_00625) | - | 111272..111754 (+) | 483 | WP_001219092.1 | terminase small subunit | - |
| Aba3207_RS00630 (Aba3207_00630) | - | 111758..113449 (+) | 1692 | WP_000097335.1 | terminase large subunit | - |
| Aba3207_RS00635 (Aba3207_00635) | - | 113446..114672 (+) | 1227 | WP_000108389.1 | phage portal protein | - |
| Aba3207_RS00640 (Aba3207_00640) | - | 114665..115327 (+) | 663 | WP_000375471.1 | HK97 family phage prohead protease | - |
| Aba3207_RS00645 (Aba3207_00645) | - | 115320..116492 (+) | 1173 | WP_000137059.1 | phage major capsid protein | - |
| Aba3207_RS20600 | - | 116540..116716 (+) | 177 | WP_000666093.1 | hypothetical protein | - |
| Aba3207_RS00650 (Aba3207_00650) | - | 116713..117000 (+) | 288 | WP_000631203.1 | head-tail connector protein | - |
| Aba3207_RS00655 (Aba3207_00655) | - | 117002..117358 (+) | 357 | WP_001139338.1 | phage head closure protein | - |
| Aba3207_RS00660 (Aba3207_00660) | - | 117362..117847 (+) | 486 | WP_000107144.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| Aba3207_RS00665 (Aba3207_00665) | gp17 | 117847..118218 (+) | 372 | WP_000568017.1 | tail completion protein gp17 | - |
| Aba3207_RS00670 (Aba3207_00670) | - | 118295..118768 (+) | 474 | WP_000024427.1 | phage tail tube protein | - |
| Aba3207_RS00675 (Aba3207_00675) | - | 118768..119283 (+) | 516 | WP_001074129.1 | phage tail assembly chaperone family protein, TAC | - |
| Aba3207_RS00680 (Aba3207_00680) | - | 119319..119534 (+) | 216 | WP_002021720.1 | hypothetical protein | - |
| Aba3207_RS00685 (Aba3207_00685) | - | 119613..120548 (+) | 936 | WP_000725048.1 | hypothetical protein | - |
| Aba3207_RS00690 (Aba3207_00690) | - | 120754..124437 (+) | 3684 | WP_000224762.1 | transglycosylase SLT domain-containing protein | - |
| Aba3207_RS00695 (Aba3207_00695) | - | 124514..124855 (+) | 342 | WP_000071083.1 | phage tail protein | - |
| Aba3207_RS00700 (Aba3207_00700) | - | 124910..126052 (+) | 1143 | WP_000166380.1 | hypothetical protein | - |
| Aba3207_RS00705 (Aba3207_00705) | - | 126039..126848 (+) | 810 | WP_000174382.1 | phage minor tail protein L | - |
| Aba3207_RS00710 (Aba3207_00710) | - | 126855..127610 (+) | 756 | WP_000778496.1 | C40 family peptidase | - |
| Aba3207_RS00715 (Aba3207_00715) | - | 127594..128250 (+) | 657 | WP_000920730.1 | tail assembly protein | - |
| Aba3207_RS00720 (Aba3207_00720) | gpJ | 128306..134533 (+) | 6228 | WP_063558477.1 | TipJ family phage tail tip protein | - |
| Aba3207_RS00725 (Aba3207_00725) | - | 134582..134848 (+) | 267 | WP_024437171.1 | holin | - |
| Aba3207_RS00730 (Aba3207_00730) | - | 134832..135341 (+) | 510 | WP_000066827.1 | lysozyme | - |
Sequence
Protein
Download Length: 233 a.a. Molecular weight: 26627.52 Da Isoelectric Point: 9.3468
>NTDB_id=178807 Aba3207_RS00430 WP_000594590.1 83368..84069(+) (xcpW) [Acinetobacter baumannii strain 3207]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWTYSLNQGDLSLSQEGNS
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWTYSLNQGDLSLSQEGNS
Nucleotide
Download Length: 702 bp
>NTDB_id=178807 Aba3207_RS00430 WP_000594590.1 83368..84069(+) (xcpW) [Acinetobacter baumannii strain 3207]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGACTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGACTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpW | Acinetobacter baumannii D1279779 |
99.142 |
100 |
0.991 |