Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BTI679_RS22955 Genome accession   NZ_CP015257
Coordinates   4400155..4402491 (-) Length   778 a.a.
NCBI ID   WP_103655254.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain Bt18679     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4395155..4407491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI679_RS22930 (BTI679_46520) - 4397817..4398161 (+) 345 Protein_4496 PH domain-containing protein -
  BTI679_RS22935 (BTI679_46530) - 4398200..4399267 (-) 1068 WP_064474723.1 AI-2E family transporter -
  BTI679_RS22940 (BTI679_46540) - 4399444..4399656 (+) 213 WP_000242555.1 hypothetical protein -
  BTI679_RS22945 (BTI679_46550) - 4399692..4399820 (-) 129 WP_001053553.1 YrzQ family protein -
  BTI679_RS22950 (BTI679_46560) - 4399839..4400027 (-) 189 WP_000469281.1 hypothetical protein -
  BTI679_RS22955 (BTI679_46570) recD2 4400155..4402491 (-) 2337 WP_103655254.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BTI679_RS22960 (BTI679_46580) - 4402588..4403247 (-) 660 WP_064474721.1 tetratricopeptide repeat protein -
  BTI679_RS22965 (BTI679_46590) mnmA 4403358..4404473 (-) 1116 WP_064474720.1 tRNA 2-thiouridine(34) synthase MnmA -
  BTI679_RS22970 (BTI679_46600) - 4404490..4405635 (-) 1146 WP_064474719.1 cysteine desulfurase family protein -
  BTI679_RS22975 (BTI679_46610) - 4405671..4406087 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87343.85 Da        Isoelectric Point: 5.1999

>NTDB_id=178134 BTI679_RS22955 WP_103655254.1 4400155..4402491(-) (recD2) [Bacillus wiedmannii strain Bt18679]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGMSGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIIGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLKVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=178134 BTI679_RS22955 WP_103655254.1 4400155..4402491(-) (recD2) [Bacillus wiedmannii strain Bt18679]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAGACGAATGAAACGTACGATGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCACAAACAAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGATCATCTTGGGGAACATGCCATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAATGGTGTTGTCAATAAGCAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCATATCAGCTTATTGAAGAAGTGGACGGGATTGGTTTTGGACGAGCGGATGATA
TAGGACGTGCGTTAGGGATGTCAGGTAATCATGATGACCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTTTCA
CTGCAGCTCGGCCATGTTTATATGGGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGTAG
AGTGACTGAGGAAGATATTATAGGTTGTGTTGAAATGATGCAAAGTGAAGGGAAAGTCATCATTGAAGAAGAACGAGTGT
ATTTAGCGTCGTTATTTTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAAGAGGAAACCCCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAGCTGAAGGTGCAGTATGCACCTTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAGCCGATGATGTTATTGACAGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTACGCATCCTTGCATGGTGTATCATTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCTACCGGGCTCCCTGCTTGTACAATTCATCGTCT
GCTTGGTTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACCGATCCAGTTCAAGGGAAGTTACTCATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTTGCAAATCAGCTGTTTAAATCATTGCCGACTAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTGTTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTCGCTCATGCGATAAAAAATGGAACGCTCCCGCCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTACTGGCCCCGATGTACCGTGGACCTGCCGGCATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAATGTTGAGCAACAGGACATGATTATCGTTTCATTTGATGGAATCGAAGTAACGTATAC
AAAGCCGGATTTAAATCAAATTACCCATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCAATAGTTA
TTATGCCGATTGTAAAGAGCTACTACCGTATGTTACGTCGCAATTTAATTTACACGGGCATTACAAGGAGTAAGAAATTC
CTTATTATTTGTGGGGAGGAAGCGGCTTTTCAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGTCGTTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.269

100

0.582

Multiple sequence alignment