Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BTI247_RS22790 Genome accession   NZ_CP015250
Coordinates   4488341..4490680 (-) Length   779 a.a.
NCBI ID   WP_069356226.1    Uniprot ID   A0A9W3SX55
Organism   Bacillus thuringiensis Bt18247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4483341..4495680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI247_RS33880 (BTI247_46810) - 4484071..4484247 (-) 177 WP_001242605.1 hypothetical protein -
  BTI247_RS22770 (BTI247_46820) - 4484330..4484662 (-) 333 WP_069356225.1 YrdB family protein -
  BTI247_RS22775 (BTI247_46830) - 4484930..4485370 (-) 441 WP_001266965.1 D-tyrosyl-tRNA(Tyr) deacylase -
  BTI247_RS22780 (BTI247_46840) relA 4485387..4487570 (-) 2184 WP_001262795.1 GTP diphosphokinase -
  BTI247_RS22785 (BTI247_46850) - 4487781..4488293 (-) 513 WP_000346217.1 adenine phosphoribosyltransferase -
  BTI247_RS22790 (BTI247_46860) recJ 4488341..4490680 (-) 2340 WP_069356226.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BTI247_RS22795 (BTI247_46870) - 4490782..4491675 (-) 894 WP_069356227.1 cation diffusion facilitator family transporter -
  BTI247_RS22800 (BTI247_46880) secDF 4491832..4494096 (-) 2265 WP_069356228.1 protein translocase subunit SecDF -
  BTI247_RS22805 (BTI247_46890) - 4494366..4494650 (-) 285 WP_000886979.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88179.68 Da        Isoelectric Point: 4.8429

>NTDB_id=178088 BTI247_RS22790 WP_069356226.1 4488341..4490680(-) (recJ) [Bacillus thuringiensis Bt18247]
MLQPKTRWKEKEYNDERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENNFPPEENKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPIKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQADVILTEEDFIPITAVDVFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDADLESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNAEANLAELPKEKITMVYFSEEVLNKFSLEDYKEKLMHASEVTHLDDQYIVLLDLPSGTDELRE
LFKVGFPARIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKTPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=178088 BTI247_RS22790 WP_069356226.1 4488341..4490680(-) (recJ) [Bacillus thuringiensis Bt18247]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGACGAGCGAGTGAGTGAATTAGCAAGTAAATTACAGTT
ATCGCCACTTGTCGTTTCATTATTCCTCGGTAGAGGACTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGATTACGATGCGGACGGAGTAAGTAGTACAACTGTGTTATATCTTGCTCTTCAAGAATT
AGGTGCAGAAGTAGAATTTTACATTCCAAATCGTTTTACAGAAGGCTATGGACCGAACGAAGAAGCGTTTCGTTGGGCGC
ATAGCGCAGGGTTCTCACTGATTATTACTGTCGACACTGGCATCGCAGCAGTACATGAAGCGAATGTAGCGAAAGAGCTT
GGAATAGATCTGATTATTACAGATCACCATGAGCCACCGCCAGAATTGCCAGAAGCACTTGCGATTATACATCCGAAATT
AGAAGGTGGCGTATATCCGTTTCACTATTTAGCTGGTGTAGGTGTTGCGTTTAAAGTTGCGCATGCACTATTAGGCCGAG
TACCAGAACATTTATTAGAGATTGCAGTAATCGGTACAGTAGCCGATTTAGTATCACTTCATGGTGAAAATAGGTTGCTA
GTGAAACGCGGTTTAAAGCATATGCGTATGACGAGAAATATTGGTTTGAAGGCATTGTTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGTATCGGCTTCTCAATTGCACCGCGTATTAATGCGGTTGGGCGTTTAGAAGATGCAACGC
CGGCTGTACATCTTTTATTATCAGATGATCCTGAGGAAGCGAAAGAGTTAGCCGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAGGCTATCGCTGAAGTTGAAAATAACTTCCCGCCAGAAGAAAACAAAGT
GTTAGTACTTGCAAAAGAAGGTTGGAATCCAGGTGTAATTGGGATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CGACTATTGTATTATGCATTGATCCTATAAAAGAAACAGCAAAAGGCTCAGCGCGTAGTATTGCAGGATTTGATTTGTTT
GCAAATTTATCAGATTGTAGAGAGTTATTGCCACACTTTGGAGGGCATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGTCGCCGCTTAAATGAACAAGCAGATGTAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CAGTTGATGTTTTTTGCAAAGTAGAGGATGTAACACTAGCGGCAATTGAAGATATGCAGAAGTTAGCACCATTTGGTGTT
GGAAATCCGAAACCACGTATTGCAGTGAAAGATGCAGATTTAGAAAGTATTCGCGCAATCGGATCAGATGGCTCTCATTT
AAAAATGGCTCTTCGTGATGGACAAGCAACACTGGATACAATTGGATTTGGTTTTGGTGCATATGCGAAAGAAATCTCTC
CAGTTGCAAAAGTATCTGTAATAGGAGAAGCATCCATCAATGAATGGAACAATTTTAAGAAGCCACAATTAATGGTACAA
GATATTGCTGTAGAGGCGTGGCAATTATTTGATTGGCGTAGTATGCGTAATGCAGAAGCAAATTTAGCAGAACTTCCGAA
AGAAAAAATAACAATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAGGACTATAAAGAAAAGCTTATGC
ATGCGTCAGAAGTAACGCATTTGGATGATCAATACATCGTGTTACTCGATTTGCCAAGCGGAACAGATGAATTACGTGAG
TTATTTAAAGTAGGATTCCCAGCGCGAATTTATACGCTATTTTATCAAGAGAATAACCACTTATTTAGTACAGTTCCGAC
GAGAGAACACTTTAAATGGTACTATTCTTTCTTAAGCCAAAAAACACCATTTTCTTTAAGACAATATGGAGAACAACTAT
GTCGTCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.455

99.358

0.521

Multiple sequence alignment