Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BTI247_RS19870 Genome accession   NZ_CP015250
Coordinates   3946272..3947051 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis Bt18247     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3941272..3952051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI247_RS19845 (BTI247_40850) uppS 3942020..3942796 (-) 777 WP_000971296.1 isoprenyl transferase -
  BTI247_RS19850 (BTI247_40860) frr 3942882..3943439 (-) 558 WP_000531505.1 ribosome recycling factor -
  BTI247_RS19855 (BTI247_40870) pyrH 3943442..3944164 (-) 723 WP_000042669.1 UMP kinase -
  BTI247_RS19860 (BTI247_40880) tsf 3944231..3945118 (-) 888 WP_016080531.1 translation elongation factor Ts -
  BTI247_RS19865 (BTI247_40890) rpsB 3945222..3945923 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  BTI247_RS19870 (BTI247_40900) codY 3946272..3947051 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BTI247_RS19875 (BTI247_40910) hslU 3947129..3948520 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  BTI247_RS19880 (BTI247_40920) hslV 3948543..3949085 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  BTI247_RS19885 (BTI247_40930) xerC 3949128..3950027 (-) 900 WP_053563759.1 tyrosine recombinase XerC -
  BTI247_RS19890 (BTI247_40940) trmFO 3950093..3951397 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=178079 BTI247_RS19870 WP_000421290.1 3946272..3947051(-) (codY) [Bacillus thuringiensis Bt18247]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=178079 BTI247_RS19870 WP_000421290.1 3946272..3947051(-) (codY) [Bacillus thuringiensis Bt18247]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCGTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment