Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   A4A60_RS09280 Genome accession   NZ_CP015222
Coordinates   1784727..1785506 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain HRBS-10TDI13     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1779727..1790506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4A60_RS09260 (A4A60_09270) trmFO 1780420..1781727 (+) 1308 WP_069837510.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  A4A60_RS09265 (A4A60_09275) xerC 1781795..1782709 (+) 915 WP_014479777.1 tyrosine recombinase XerC -
  A4A60_RS09270 (A4A60_09280) clpQ 1782722..1783267 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  A4A60_RS09275 (A4A60_09285) hslU 1783284..1784687 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  A4A60_RS09280 (A4A60_09290) codY 1784727..1785506 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  A4A60_RS09285 (A4A60_09295) flgB 1785886..1786275 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  A4A60_RS09290 (A4A60_09300) flgC 1786275..1786727 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  A4A60_RS09295 (A4A60_09305) fliE 1786738..1787058 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  A4A60_RS09300 (A4A60_09310) fliF 1787104..1788714 (+) 1611 WP_046160402.1 flagellar basal-body MS-ring/collar protein FliF -
  A4A60_RS09305 (A4A60_09315) fliG 1788727..1789743 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  A4A60_RS09310 (A4A60_09320) fliH 1789736..1790488 (+) 753 WP_014479782.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=177649 A4A60_RS09280 WP_003220850.1 1784727..1785506(+) (codY) [Bacillus subtilis strain HRBS-10TDI13]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=177649 A4A60_RS09280 WP_003220850.1 1784727..1785506(+) (codY) [Bacillus subtilis strain HRBS-10TDI13]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment