Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CJJRM1285_RS06780 Genome accession   NZ_CP015209
Coordinates   1305489..1306004 (-) Length   171 a.a.
NCBI ID   WP_002907516.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain RM1285     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1300489..1311004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJRM1285_RS06765 (CjjRM1285_1336) - 1300582..1302318 (-) 1737 WP_065453918.1 flagellin A -
  CJJRM1285_RS06770 (CjjRM1285_1337) - 1302401..1304227 (-) 1827 WP_065453920.1 motility associated factor glycosyltransferase family protein -
  CJJRM1285_RS06775 (CjjRM1285_1338) - 1304239..1305489 (-) 1251 WP_038816477.1 DUF2920 family protein -
  CJJRM1285_RS06780 (CjjRM1285_1339) ctsG 1305489..1306004 (-) 516 WP_002907516.1 type II secretion system protein Machinery gene
  CJJRM1285_RS06785 (CjjRM1285_1340) tsaD 1306005..1307012 (-) 1008 WP_002867317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CJJRM1285_RS06790 (CjjRM1285_1341) - 1307009..1308403 (-) 1395 WP_002856050.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CJJRM1285_RS06795 (CjjRM1285_1342) dxr 1308405..1309475 (-) 1071 WP_002855670.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CJJRM1285_RS06800 (CjjRM1285_1343) cdsA 1309472..1310197 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  CJJRM1285_RS06805 (CjjRM1285_1344) - 1310206..1310544 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.52 Da        Isoelectric Point: 6.4693

>NTDB_id=177581 CJJRM1285_RS06780 WP_002907516.1 1305489..1306004(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain RM1285]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNIKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=177581 CJJRM1285_RS06780 WP_002907516.1 1305489..1306004(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain RM1285]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACATTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment