Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   A0O34_RS13305 Genome accession   NZ_CP015199
Coordinates   2993549..2994211 (-) Length   220 a.a.
NCBI ID   WP_335617671.1    Uniprot ID   -
Organism   Chryseobacterium glaciei strain IHBB 10212     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2988549..2999211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O34_RS13280 (A0O34_13270) - 2989251..2989658 (+) 408 WP_066755271.1 hypothetical protein -
  A0O34_RS22365 - 2989729..2989866 (+) 138 WP_157886016.1 hypothetical protein -
  A0O34_RS13285 (A0O34_13275) der 2990011..2991321 (+) 1311 WP_066755272.1 ribosome biogenesis GTPase Der -
  A0O34_RS13290 (A0O34_13280) upp 2991406..2992059 (+) 654 WP_066755273.1 uracil phosphoribosyltransferase -
  A0O34_RS13295 (A0O34_13285) - 2992061..2992750 (-) 690 WP_066755274.1 alpha/beta fold hydrolase -
  A0O34_RS13300 (A0O34_13290) - 2992885..2993526 (-) 642 WP_066755275.1 hypothetical protein -
  A0O34_RS13305 (A0O34_13295) comF 2993549..2994211 (-) 663 WP_335617671.1 ComF family protein Machinery gene
  A0O34_RS13310 (A0O34_13300) - 2994503..2995981 (-) 1479 WP_066755276.1 helix-turn-helix domain-containing protein -
  A0O34_RS13315 (A0O34_13305) aceB 2996108..2997682 (+) 1575 WP_066755277.1 malate synthase A -
  A0O34_RS13320 (A0O34_13310) aceA 2997750..2999030 (+) 1281 WP_066755278.1 isocitrate lyase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25704.87 Da        Isoelectric Point: 8.0604

>NTDB_id=177473 A0O34_RS13305 WP_335617671.1 2993549..2994211(-) (comF) [Chryseobacterium glaciei strain IHBB 10212]
MKDIFLDVLFPNRCLACNKIIENNLIACNVCFEKIQFTHFDYFEENILKEICKTLFPVENAYALIQFEKESLSRKIIHEL
KYKNREKTGEILANWITERVDFKNEKPDLIVSIPLHTKKLKERGYNQLHLFAETLSEFYKIPFDHEVILRNHYSKAQALK
DKKHRLSTENIFSINKNISGKHVLLVDDVFTTGNTIATVAWEILKTGDNKVSVLVMAIDK

Nucleotide


Download         Length: 663 bp        

>NTDB_id=177473 A0O34_RS13305 WP_335617671.1 2993549..2994211(-) (comF) [Chryseobacterium glaciei strain IHBB 10212]
TTGAAAGATATATTTCTTGATGTGTTATTTCCAAATCGTTGCTTAGCTTGTAATAAAATTATTGAGAATAATCTTATCGC
TTGTAATGTATGTTTTGAAAAAATTCAGTTTACCCATTTTGATTATTTTGAGGAAAATATACTTAAAGAAATATGTAAAA
CGCTTTTTCCTGTAGAAAACGCATATGCATTGATACAGTTTGAAAAAGAAAGCTTAAGCCGGAAAATTATACATGAATTA
AAATATAAAAACAGAGAAAAAACAGGTGAAATTTTAGCCAATTGGATCACAGAACGTGTAGATTTCAAAAATGAAAAACC
AGATCTGATAGTCAGCATTCCTCTTCATACAAAGAAATTGAAAGAACGGGGGTATAATCAGTTGCATCTGTTTGCTGAGA
CATTATCTGAGTTTTACAAAATACCTTTCGATCATGAAGTAATTTTGAGAAATCATTATTCAAAAGCGCAGGCTTTGAAA
GATAAAAAGCACCGTTTGAGTACTGAAAATATATTCTCAATCAATAAAAATATTTCTGGAAAACATGTGCTTTTAGTTGA
TGATGTTTTTACAACTGGAAATACAATTGCCACAGTAGCATGGGAAATCCTTAAAACAGGAGATAACAAGGTAAGCGTAC
TGGTAATGGCGATAGATAAATAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(5-37)

Phosphoribosyl transferase domain (Pribosyltran)

(103-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

48.848

98.636

0.482

Multiple sequence alignment