Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   A4H00_RS07900 Genome accession   NZ_CP015196
Coordinates   1569194..1570024 (+) Length   276 a.a.
NCBI ID   WP_067089091.1    Uniprot ID   -
Organism   Streptococcus marmotae strain HTS5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1564194..1575024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4H00_RS07875 atpD 1565081..1566487 (+) 1407 WP_067089069.1 F0F1 ATP synthase subunit beta -
  A4H00_RS07880 - 1566497..1566913 (+) 417 WP_067089073.1 F0F1 ATP synthase subunit epsilon -
  A4H00_RS07885 - 1567286..1567516 (+) 231 WP_067089076.1 DUF1146 family protein -
  A4H00_RS07890 murA 1567588..1568862 (+) 1275 WP_067089081.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  A4H00_RS07895 - 1568863..1569057 (+) 195 WP_067089086.1 DNA-directed RNA polymerase subunit beta -
  A4H00_RS07900 endA 1569194..1570024 (+) 831 WP_067089091.1 DNA/RNA non-specific endonuclease Machinery gene
  A4H00_RS07905 - 1570033..1570494 (+) 462 WP_067089094.1 GNAT family N-acetyltransferase -
  A4H00_RS07910 - 1570709..1572253 (+) 1545 WP_067089098.1 MFS transporter -
  A4H00_RS07915 - 1572320..1573348 (+) 1029 WP_067089103.1 sugar kinase -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30305.99 Da        Isoelectric Point: 9.9620

>NTDB_id=177452 A4H00_RS07900 WP_067089091.1 1569194..1570024(+) (endA) [Streptococcus marmotae strain HTS5]
MARKKTKKQSMSLASLVITFLLVAGGYFWAEGTSTVSHRPVTRVENAASRPSEELAHSVLTDTVRAQLGSDLVYNGAGAF
VMNGNRTDLDAAVASVPYADNKTKIAQGKVVPTVANALLSKATRQYQKREETGNGSTSWKPAGWHQVRHLEGEYNHAIDR
GHLLAYSLVGGLKGYDASTSNPKNIAVQTAWSNQSNRPDATGQNYFETQVRRALDRNKRVRYRVTLIYQSQEDLVPVGSH
LEAKAADGSLEFNVFVPNVQQGLVIDYYSGKIHLNQ

Nucleotide


Download         Length: 831 bp        

>NTDB_id=177452 A4H00_RS07900 WP_067089091.1 1569194..1570024(+) (endA) [Streptococcus marmotae strain HTS5]
ATGGCAAGGAAAAAAACAAAAAAACAGAGTATGAGTCTAGCTAGCCTAGTGATCACTTTCTTACTGGTGGCTGGTGGTTA
TTTTTGGGCAGAAGGAACTTCGACCGTATCTCATCGACCAGTTACTAGAGTAGAAAATGCTGCATCTAGGCCTTCAGAAG
AGCTAGCACATTCCGTTTTGACGGACACGGTGCGGGCTCAGTTGGGATCTGACCTTGTCTACAATGGTGCAGGAGCCTTT
GTGATGAATGGCAATCGAACAGATCTCGATGCTGCTGTTGCAAGTGTACCATATGCAGATAATAAGACCAAGATAGCTCA
AGGGAAAGTTGTTCCAACGGTCGCAAATGCTCTTTTAAGTAAGGCAACCCGTCAGTATCAAAAGCGGGAGGAGACAGGAA
ATGGCTCGACCAGCTGGAAACCGGCTGGCTGGCATCAAGTAAGGCATTTAGAAGGGGAATACAACCATGCCATTGATAGA
GGGCACTTATTAGCTTATTCCTTAGTTGGTGGGTTAAAAGGGTACGATGCTTCAACCAGTAACCCTAAAAATATAGCCGT
CCAGACTGCGTGGTCCAACCAATCCAATCGCCCAGATGCGACAGGTCAAAATTATTTTGAAACACAGGTACGTAGAGCCT
TAGATCGAAATAAGCGGGTACGGTATCGAGTGACATTGATCTATCAATCGCAGGAAGATTTAGTGCCAGTAGGAAGTCAT
TTGGAAGCGAAAGCAGCAGACGGCAGTCTGGAGTTTAATGTTTTTGTCCCAAATGTCCAGCAGGGCTTAGTTATTGATTA
TTACAGTGGGAAGATTCATCTTAACCAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(82-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

61.024

92.029

0.562
  endA Streptococcus pneumoniae D39

61.024

92.029

0.562
  endA Streptococcus pneumoniae R6

61.024

92.029

0.562
  endA Streptococcus pneumoniae TIGR4

61.024

92.029

0.562

Multiple sequence alignment