Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A4H00_RS06305 Genome accession   NZ_CP015196
Coordinates   1228057..1229805 (+) Length   582 a.a.
NCBI ID   WP_067088267.1    Uniprot ID   -
Organism   Streptococcus marmotae strain HTS5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1223057..1234805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4H00_RS06285 - 1223555..1224643 (-) 1089 WP_067088262.1 low temperature requirement protein A -
  A4H00_RS06290 - 1224673..1225668 (-) 996 WP_067088264.1 YdcF family protein -
  A4H00_RS06295 - 1225853..1226305 (+) 453 WP_067088265.1 MarR family winged helix-turn-helix transcriptional regulator -
  A4H00_RS06300 - 1226302..1228067 (+) 1766 Protein_1195 ABC transporter ATP-binding protein -
  A4H00_RS06305 rcrQ 1228057..1229805 (+) 1749 WP_067088267.1 ABC transporter ATP-binding protein Regulator
  A4H00_RS06310 - 1230105..1230542 (+) 438 WP_067088269.1 CoA-binding protein -
  A4H00_RS06315 - 1230542..1231039 (+) 498 WP_067088271.1 kinase -
  A4H00_RS06320 - 1231092..1232174 (+) 1083 WP_067088273.1 hypothetical protein -
  A4H00_RS06325 efeO 1232490..1233347 (+) 858 WP_067088275.1 iron uptake system protein EfeO -
  A4H00_RS06330 efeB 1233351..1234583 (+) 1233 WP_067088277.1 iron uptake transporter deferrochelatase/peroxidase subunit -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63866.88 Da        Isoelectric Point: 6.5627

>NTDB_id=177446 A4H00_RS06305 WP_067088267.1 1228057..1229805(+) (rcrQ) [Streptococcus marmotae strain HTS5]
MENKKSSLLNQMKPYTKGFQVPFVVAVIGAIISSIITVIGPDKLSEITDLITKGLMTGIDTDKVSEIAMTLAILYGIGAV
VNYAQAFTISTIVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTASQSLNQSLGTVLSSSILLVAALIMM
FKTNVTLSFVTIASVLFGFVFVGIIMGRAKGFFKSQQTNLANVNGYVEEMYSGHSVVASYHAGRTVKEEFQHLNQALYTS
MWKSQFISGIMMPMMMFIGNFGYVMVVVTGAALTLNGHATMGTIVAFMVYVRIFSQPLSQIAQGLTVLQSASAAMGRVFE
FLGEPEMEVDSHKAQELSTVKGDVTFEHVSFGYSADKTIIHDFSAIAKAGQKIAIVGPTGAGKTTIVNLLMKFYDIDQGR
ILIDGIDTKNMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQSHVSDEAVIEAAKAVGVHHFIMTLPKGYDTLLDDTVNL
SVGQKQLLTIARALLKNAPLLILDEATSSVDTRTEELIQRAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDALMAQNGFYANLYNSQFVEE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=177446 A4H00_RS06305 WP_067088267.1 1228057..1229805(+) (rcrQ) [Streptococcus marmotae strain HTS5]
ATGGAAAATAAAAAATCTTCTTTATTGAACCAGATGAAGCCCTATACCAAAGGCTTCCAAGTTCCTTTTGTCGTTGCGGT
GATTGGAGCGATTATCTCAAGCATTATCACGGTAATTGGTCCTGATAAACTCAGCGAGATTACAGACTTGATCACCAAGG
GCTTGATGACGGGAATTGATACGGATAAGGTGTCAGAAATCGCGATGACCCTAGCTATTCTTTACGGAATTGGAGCGGTG
GTTAACTACGCTCAAGCCTTTACTATTTCAACAATCGTTCAGCATTTTTCAAAACGGTTGCGGACGGCGATTGCAGAAAA
AATTAACAAACTCCCTCTCCGTTATTTTGATAGTCATTCGCAAGGTGATACCTTATCCCGTGTCACCAATGATGTGGATA
CGGCTAGCCAATCCCTCAACCAAAGTTTGGGGACGGTTCTTTCTTCTAGTATTCTCTTGGTAGCAGCCCTCATTATGATG
TTTAAAACCAATGTGACCTTATCCTTTGTCACCATTGCTTCTGTCTTGTTTGGCTTTGTCTTTGTTGGTATTATCATGGG
GCGTGCAAAGGGCTTCTTCAAAAGTCAGCAGACCAATCTTGCTAATGTAAATGGCTATGTAGAAGAAATGTACTCTGGGC
ATTCGGTGGTTGCTAGCTATCATGCGGGTCGTACAGTAAAAGAAGAGTTTCAGCATCTCAATCAAGCCCTGTACACAAGT
ATGTGGAAATCCCAATTCATTTCAGGGATTATGATGCCCATGATGATGTTTATCGGAAACTTTGGTTACGTCATGGTTGT
AGTGACAGGAGCAGCCTTGACACTAAATGGTCATGCAACCATGGGAACGATTGTAGCCTTTATGGTCTATGTGCGGATCT
TCTCTCAGCCCCTTTCTCAGATTGCCCAAGGTTTGACAGTCTTACAATCAGCTAGCGCTGCGATGGGTCGTGTGTTTGAA
TTCTTGGGTGAGCCTGAAATGGAGGTGGACAGCCATAAGGCACAAGAACTTAGTACTGTAAAAGGCGATGTCACATTTGA
GCACGTTTCCTTTGGCTATTCTGCTGATAAGACCATTATCCATGACTTCTCCGCAATAGCTAAGGCTGGGCAAAAAATTG
CCATTGTGGGGCCAACAGGAGCTGGAAAGACGACCATTGTCAATCTCTTGATGAAGTTCTATGACATTGATCAAGGCCGT
ATTTTGATTGACGGGATTGATACCAAAAATATGAAACGTTCTGAAGTTCATGATGCCTTTAGTATGGTCTTACAAGATAC
CTGGCTCTTTGAGGGAACGATTAAGGAAAATCTGATTTATAATCAAAGCCATGTTTCAGACGAAGCGGTTATCGAAGCTG
CCAAAGCAGTCGGAGTGCATCATTTTATTATGACCTTGCCGAAAGGCTACGATACCCTGCTAGATGATACGGTAAACTTA
TCTGTCGGGCAAAAACAATTGCTAACCATTGCACGTGCCTTGTTGAAAAATGCTCCCCTTCTGATCCTTGATGAGGCAAC
TAGCTCTGTTGATACGCGGACAGAGGAATTGATCCAAAGGGCCATGGATAAACTGATGGAAGGCCGTACTTCCTTTGTCA
TTGCCCACCGCCTATCCACTATCCGAAATGCGGATCTCATCTTAGTGATGAAAGACGGCAATATCATTGAACAAGGCAAT
CATGATGCTCTGATGGCTCAAAATGGCTTCTATGCCAACCTTTACAACAGCCAGTTTGTCGAGGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(24-298)

ABC transporter (ABC_tran)

(362-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.79

100

0.708

Multiple sequence alignment