Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   Bt4C1_RS21550 Genome accession   NZ_CP015176
Coordinates   4240686..4243022 (-) Length   778 a.a.
NCBI ID   WP_000528079.1    Uniprot ID   A0A9W5QQW8
Organism   Bacillus thuringiensis serovar alesti strain BGSC 4C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4235686..4248022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bt4C1_RS21525 (Bt4C1_21530) - 4238331..4238675 (+) 345 WP_063675729.1 PH domain-containing protein -
  Bt4C1_RS21530 (Bt4C1_21535) - 4238720..4239787 (-) 1068 WP_000793127.1 AI-2E family transporter -
  Bt4C1_RS21535 (Bt4C1_21540) - 4239964..4240176 (+) 213 WP_000242539.1 hypothetical protein -
  Bt4C1_RS21540 (Bt4C1_21545) - 4240223..4240351 (-) 129 WP_001053553.1 YrzQ family protein -
  Bt4C1_RS21545 (Bt4C1_21550) - 4240370..4240558 (-) 189 WP_000469281.1 hypothetical protein -
  Bt4C1_RS21550 (Bt4C1_21555) recD2 4240686..4243022 (-) 2337 WP_000528079.1 ATP-dependent RecD-like DNA helicase Machinery gene
  Bt4C1_RS21555 (Bt4C1_21560) - 4243118..4243777 (-) 660 WP_000066406.1 tetratricopeptide repeat protein -
  Bt4C1_RS21560 (Bt4C1_21565) mnmA 4243887..4245002 (-) 1116 WP_001038011.1 tRNA 2-thiouridine(34) synthase MnmA -
  Bt4C1_RS21565 (Bt4C1_21570) - 4245019..4246164 (-) 1146 WP_000439891.1 cysteine desulfurase family protein -
  Bt4C1_RS21570 (Bt4C1_21575) - 4246200..4246616 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87466.00 Da        Isoelectric Point: 5.3320

>NTDB_id=177325 Bt4C1_RS21550 WP_000528079.1 4240686..4243022(-) (recD2) [Bacillus thuringiensis serovar alesti strain BGSC 4C1]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFKSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=177325 Bt4C1_RS21550 WP_000528079.1 4240686..4243022(-) (recD2) [Bacillus thuringiensis serovar alesti strain BGSC 4C1]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCACTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCGGAAAAAATTGTGGATCATCTCGGGGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCGTTAAATGGTGTTGTTAACAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATTGAAGAAGTGGACGGGATTGGTTTTGGACGAGCGGATGATA
TAGGGCGTGCGTTAGGAATATCGGGTAATCACGACGACCGTGTACGAGCGGGATGTTTTTACACATTAGAGAATGTCTCA
TTGCAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTATAGGTTGTATTGAAACAATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAACGAGTGT
ATTTAGCAACTTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTCGATTGATGAATCAAGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAGTTAAACGTGCAGTATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAGCCAATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACAACTGTTATTAAAG
GGATTGTTGAAATGTATGCGTCACTTCACGGATTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGGATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
GCTTGGCTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCGAATCAGCTATTTAAGTCGCTACCGACGAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGCGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCAGAAGGCTCATCTGTTATTCAACTTGCCCATGCAATCAAAGACGGCACGCTCCCGCCAG
ATTTAGCACAAAATAAAAAAGATCGTTCATTTATCAGCTGTACAGGGGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGT
GAAAATGCTAAAACAAAAGGATTTAGTGCAAGGGATGTCCAAGTATTAGCGCCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCATTGCAACAAGTATTTAATCCGAAGAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTTAATCAGCCAGAGAGCCAGGTGTTTAATGGTGATATTGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
AAAGCCCGATTTAAATCAAATTACGCATGCATATTGTTGTTCCATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATCGTGAAAAGTTACAACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTCAAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACTTTGGC
TAGTCGCTTGCAGGAATCACAAGGAGAAGTACAGATGGTCACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578

Multiple sequence alignment