Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | IEC338SC_RS01635 | Genome accession | NZ_CP015145 |
| Coordinates | 349214..349636 (+) | Length | 140 a.a. |
| NCBI ID | WP_063097785.1 | Uniprot ID | A0AB33BG91 |
| Organism | Acinetobacter pittii strain IEC338SC | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 344214..354636
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IEC338SC_RS01620 (IEC338SC_0325) | - | 344222..344911 (+) | 690 | WP_082188414.1 | pilus assembly PilX family protein | - |
| IEC338SC_RS01625 (IEC338SC_0326) | - | 344937..348641 (+) | 3705 | WP_063097783.1 | PilC/PilY family type IV pilus protein | - |
| IEC338SC_RS01630 (IEC338SC_0327) | - | 348651..349214 (+) | 564 | WP_063097784.1 | type IV pilin protein | - |
| IEC338SC_RS01635 (IEC338SC_0328) | comF | 349214..349636 (+) | 423 | WP_063097785.1 | type IV pilin protein | Machinery gene |
| IEC338SC_RS01640 (IEC338SC_0329) | rpsP | 349783..350034 (+) | 252 | WP_000260334.1 | 30S ribosomal protein S16 | - |
| IEC338SC_RS01645 (IEC338SC_0330) | rimM | 350054..350602 (+) | 549 | WP_002116736.1 | ribosome maturation factor RimM | - |
| IEC338SC_RS01650 (IEC338SC_0331) | trmD | 350645..351400 (+) | 756 | WP_063097786.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| IEC338SC_RS01655 (IEC338SC_0332) | rplS | 351620..351988 (+) | 369 | WP_002116654.1 | 50S ribosomal protein L19 | - |
| IEC338SC_RS01660 (IEC338SC_0333) | lip | 352040..352981 (-) | 942 | WP_081313475.1 | lipase family alpha/beta hydrolase | - |
| IEC338SC_RS01665 (IEC338SC_0334) | - | 353097..354128 (-) | 1032 | WP_063097788.1 | lipase secretion chaperone | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15484.44 Da Isoelectric Point: 8.4251
>NTDB_id=177083 IEC338SC_RS01635 WP_063097785.1 349214..349636(+) (comF) [Acinetobacter pittii strain IEC338SC]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRGNRADVQSEMMQTAQRLQSYYAINHHYTNATLDNGLTSKDYPTS
NAAYGLVLNVNDQTWTLTATPKTTTIQSGNGAVILNSEGQKCWTKGQSCTTSTTSNWDGR
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRGNRADVQSEMMQTAQRLQSYYAINHHYTNATLDNGLTSKDYPTS
NAAYGLVLNVNDQTWTLTATPKTTTIQSGNGAVILNSEGQKCWTKGQSCTTSTTSNWDGR
Nucleotide
Download Length: 423 bp
>NTDB_id=177083 IEC338SC_RS01635 WP_063097785.1 349214..349636(+) (comF) [Acinetobacter pittii strain IEC338SC]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAATTAATGATTGTGGTTGCCATTATTGCAATTTTGGCAGCAATTGCTTA
TCCCTCCTATACACAGTATAAAATTCGCGGAAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAGCGTCTAC
AAAGTTATTATGCTATTAATCATCATTATACAAATGCAACATTAGATAATGGATTAACAAGTAAAGACTATCCCACCTCA
AATGCAGCTTATGGACTTGTTTTAAATGTAAATGATCAAACATGGACGCTTACTGCAACTCCTAAAACAACTACGATTCA
ATCTGGAAATGGAGCTGTTATTTTGAACAGTGAAGGGCAAAAATGTTGGACCAAAGGTCAGTCTTGTACAACCTCCACCA
CATCAAATTGGGATGGTCGCTAA
ATGAAAAAATATGAAGGTTTTACCCTCATAGAATTAATGATTGTGGTTGCCATTATTGCAATTTTGGCAGCAATTGCTTA
TCCCTCCTATACACAGTATAAAATTCGCGGAAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAGCGTCTAC
AAAGTTATTATGCTATTAATCATCATTATACAAATGCAACATTAGATAATGGATTAACAAGTAAAGACTATCCCACCTCA
AATGCAGCTTATGGACTTGTTTTAAATGTAAATGATCAAACATGGACGCTTACTGCAACTCCTAAAACAACTACGATTCA
ATCTGGAAATGGAGCTGTTATTTTGAACAGTGAAGGGCAAAAATGTTGGACCAAAGGTCAGTCTTGTACAACCTCCACCA
CATCAAATTGGGATGGTCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baylyi ADP1 |
52.778 |
100 |
0.543 |
| pilE | Acinetobacter baumannii D1279779 |
52.941 |
97.143 |
0.514 |