Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   AMD27_RS09610 Genome accession   NZ_CP015110
Coordinates   2012656..2013297 (-) Length   213 a.a.
NCBI ID   WP_067659599.1    Uniprot ID   A0A143G4J2
Organism   Acinetobacter sp. TGL-Y2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2007656..2018297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS09580 (AMD27_09585) - 2007964..2008398 (-) 435 WP_067659579.1 SRPBCC family protein -
  AMD27_RS09585 (AMD27_09590) tadA 2008469..2008996 (-) 528 WP_067659583.1 tRNA adenosine(34) deaminase TadA -
  AMD27_RS09590 (AMD27_09595) - 2008997..2010124 (-) 1128 WP_067659586.1 enoyl-CoA hydratase/isomerase family protein -
  AMD27_RS09595 (AMD27_09600) ung 2010121..2010834 (-) 714 WP_067659589.1 uracil-DNA glycosylase -
  AMD27_RS09600 (AMD27_09605) - 2010874..2011470 (-) 597 WP_067659592.1 6-pyruvoyl trahydropterin synthase family protein -
  AMD27_RS09605 (AMD27_09610) gspK 2011651..2012598 (-) 948 WP_067659595.1 type II secretion system minor pseudopilin GspK -
  AMD27_RS09610 (AMD27_09615) xcpW 2012656..2013297 (-) 642 WP_067659599.1 type II secretion system minor pseudopilin GspJ Machinery gene
  AMD27_RS09615 (AMD27_09620) gspI 2013294..2013668 (-) 375 Protein_1885 type II secretion system minor pseudopilin GspI -
  AMD27_RS09620 (AMD27_09625) - 2013814..2014416 (-) 603 WP_067659602.1 pilus assembly FimT family protein -
  AMD27_RS09625 (AMD27_09630) - 2014423..2015037 (-) 615 WP_067659605.1 TetR/AcrR family transcriptional regulator -
  AMD27_RS09630 (AMD27_09635) - 2015082..2015858 (-) 777 WP_067659608.1 TatD family hydrolase -
  AMD27_RS09635 (AMD27_09640) - 2015890..2016234 (-) 345 WP_067659611.1 PilZ domain-containing protein -
  AMD27_RS09640 (AMD27_09645) - 2016256..2017236 (-) 981 WP_150115806.1 DNA polymerase III subunit delta' -
  AMD27_RS09645 (AMD27_09650) kdsB 2017258..2018019 (-) 762 WP_067659617.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24452.12 Da        Isoelectric Point: 5.3432

>NTDB_id=176710 AMD27_RS09610 WP_067659599.1 2012656..2013297(-) (xcpW) [Acinetobacter sp. TGL-Y2]
MRLQIARKHLGFTLVELLVAIAIFAVLSALGWKVFDYLIKVKDRNATHEQNLGQLQDAYLQIQRDALQIVPITANVAGEI
QPALVLNNQNLSFSKAGVTDPLKQGLSPFERIEYQYNQQEKKIYRLKYPQLNMNASAQPLSSVLLSDVEQYQIQVLNPNE
LTQWPEDSMSQEDAKTAQLLPKGFKVKFMLRDVEYEWILTVLNTDFLKDQKDE

Nucleotide


Download         Length: 642 bp        

>NTDB_id=176710 AMD27_RS09610 WP_067659599.1 2012656..2013297(-) (xcpW) [Acinetobacter sp. TGL-Y2]
ATGAGGCTTCAGATCGCGCGAAAACATCTTGGCTTTACCTTGGTCGAGTTACTGGTTGCCATTGCCATTTTTGCGGTGCT
GTCTGCTTTGGGCTGGAAAGTGTTTGATTATTTAATCAAAGTTAAAGATCGTAATGCCACGCATGAACAGAATCTTGGAC
AGCTTCAAGACGCCTATTTGCAAATCCAGCGTGATGCTTTACAGATTGTACCCATCACGGCCAATGTTGCAGGCGAGATT
CAACCGGCATTGGTCTTAAACAATCAGAATCTAAGTTTTAGCAAGGCGGGCGTAACAGACCCTTTAAAGCAAGGCTTATC
GCCGTTTGAGCGCATTGAATACCAATATAATCAGCAAGAGAAGAAAATTTACCGTTTAAAGTATCCACAATTAAATATGA
ATGCTTCGGCACAGCCCTTATCAAGCGTACTGCTCTCCGATGTGGAGCAATATCAAATTCAAGTCTTAAATCCCAATGAG
CTGACGCAGTGGCCTGAAGATTCGATGAGTCAAGAAGATGCTAAAACTGCGCAGTTATTGCCGAAAGGTTTTAAAGTGAA
ATTTATGCTGCGTGATGTGGAGTATGAATGGATACTGACAGTGTTGAATACTGATTTTCTAAAAGATCAAAAAGATGAAT
AA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(62-193)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143G4J2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.735

92.019

0.568

Multiple sequence alignment