Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   A4G13_RS01470 Genome accession   NZ_CP015031
Coordinates   294237..294524 (+) Length   95 a.a.
NCBI ID   WP_041639601.1    Uniprot ID   -
Organism   Basfia succiniciproducens strain JF4016     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 289237..299524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4G13_RS01430 (A4G13_01415) tolB 289972..291264 (+) 1293 WP_090654661.1 Tol-Pal system beta propeller repeat protein TolB -
  A4G13_RS01435 (A4G13_01420) pal 291276..291737 (+) 462 WP_090654663.1 peptidoglycan-associated lipoprotein Pal -
  A4G13_RS01455 (A4G13_01440) - 292397..292927 (+) 531 WP_090654665.1 type II secretion system protein -
  A4G13_RS01460 (A4G13_01445) - 292924..293565 (+) 642 WP_090654667.1 hypothetical protein -
  A4G13_RS01465 (A4G13_01450) - 293552..294253 (+) 702 WP_090654669.1 DUF2572 family protein -
  A4G13_RS01470 (A4G13_01455) comQ 294237..294524 (+) 288 WP_041639601.1 DUF5374 domain-containing protein Machinery gene
  A4G13_RS01475 (A4G13_01460) recC 294599..298042 (+) 3444 WP_090654670.1 exodeoxyribonuclease V subunit gamma -
  A4G13_RS01485 (A4G13_01470) secG 298268..298609 (-) 342 WP_011199908.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10794.90 Da        Isoelectric Point: 10.1085

>NTDB_id=176316 A4G13_RS01470 WP_041639601.1 294237..294524(+) (comQ) [Basfia succiniciproducens strain JF4016]
MRKITKGMTSVSLLITMVLFSVIMLSILQWSGYQRKSAVEIYQYFQAVQIAENQKQRLFLGLGCESQVVQNGIQFRLLCV
GEKITVSYPMGKLTL

Nucleotide


Download         Length: 288 bp        

>NTDB_id=176316 A4G13_RS01470 WP_041639601.1 294237..294524(+) (comQ) [Basfia succiniciproducens strain JF4016]
ATGCGGAAAATAACTAAAGGTATGACATCCGTATCTTTATTGATAACAATGGTACTTTTTAGCGTAATAATGCTCAGTAT
TTTGCAGTGGTCCGGTTATCAGCGTAAAAGTGCGGTAGAAATTTATCAATATTTTCAAGCGGTACAAATTGCGGAAAATC
AGAAACAACGGCTGTTTTTAGGTCTGGGTTGTGAATCTCAAGTGGTGCAAAATGGCATTCAATTCCGCCTGTTATGTGTC
GGCGAGAAAATAACCGTAAGTTATCCAATGGGGAAATTAACGTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(56-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

50.538

97.895

0.495

Multiple sequence alignment