Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BTR42_RS05830 Genome accession   NZ_CP018822
Coordinates   1136342..1138078 (+) Length   578 a.a.
NCBI ID   WP_077496794.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131342..1143078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS05810 (BTR42_05495) glyA 1131702..1132952 (+) 1251 WP_013643076.1 serine hydroxymethyltransferase -
  BTR42_RS05815 (BTR42_05500) - 1132997..1133974 (+) 978 WP_009854139.1 nucleoid-associated protein -
  BTR42_RS05820 (BTR42_05505) - 1133974..1134576 (+) 603 WP_012961938.1 lysozyme family protein -
  BTR42_RS05825 (BTR42_05510) - 1134616..1136340 (+) 1725 WP_077496792.1 ABC transporter ATP-binding protein -
  BTR42_RS05830 (BTR42_05515) rcrQ 1136342..1138078 (+) 1737 WP_077496794.1 ABC transporter ATP-binding protein Regulator
  BTR42_RS05835 (BTR42_05520) - 1138217..1139671 (-) 1455 WP_077496796.1 alpha-amylase -
  BTR42_RS05840 (BTR42_05525) - 1139827..1140450 (+) 624 WP_077496798.1 class I SAM-dependent methyltransferase -
  BTR42_RS05845 (BTR42_05530) - 1140485..1141093 (-) 609 WP_013643082.1 TVP38/TMEM64 family protein -
  BTR42_RS05850 (BTR42_05535) - 1141746..1142579 (+) 834 WP_009854147.1 PRD domain-containing protein -
  BTR42_RS05855 (BTR42_05540) - 1142603..1142926 (+) 324 WP_077496800.1 PTS lactose/cellobiose transporter subunit IIA -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 63881.80 Da        Isoelectric Point: 6.0584

>NTDB_id=176200 BTR42_RS05830 WP_077496794.1 1136342..1138078(+) (rcrQ) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MKAKNQNHTSRRLFKDLLSQKGLVLGATLGTIAQVALTVYLPILIGNAVDVVLSPKSISLIVPIVAKMIVVVALNTLMQW
VNPLIYNRLTFGYIYTLRQKVMEKLNQMPISYLDKKSSGDLVSRVTTDAEQLSNGLLMVFNQFFIGILTIIITIVTMADI
DLLMLGLVLILTPLSLFLARFIAQKSYHLYQNQTKSRGQQTQYIEEMIRQESLLHTFNAQDMAIDTFTTINDTYADYSQG
AIFYSSTVNPSTRFINSLIYALLAGVGALRIMSGASTVGQLTTFLNYVNQYTKPFNDISSVLSELQSAIACAERLYAILD
EENEPLPVKAHLNADSIQGQIEFKDVSFGYTSQNTLINHLNLSIPAASKVAIVGPTGAGKSTLINLLMRFYEVNSGAIYL
DGVSMADYSVSELRQQIGMVLQETWLKVGTIHDNIAYGNPDATREEVVAAAKAANADFFIRQLPNGYDTYLADAGASLSQ
GQRQLLTIARIFVKLPKILILDEATSSIDTRTEVLIQEAFEKLMQGRTSFIIAHRLSTIQSADFILVMVDGDIIEHGTHD
DLMAKQGVYYQMQTAQAG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=176200 BTR42_RS05830 WP_077496794.1 1136342..1138078(+) (rcrQ) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGAAGGCAAAAAATCAAAATCATACTAGCCGCCGTTTGTTCAAAGATCTTTTATCACAAAAAGGACTTGTTCTTGGTGC
CACACTTGGAACGATTGCGCAAGTCGCTCTGACCGTTTATTTGCCTATTTTGATTGGGAATGCGGTGGACGTTGTTTTAT
CTCCGAAATCAATTAGTTTAATTGTGCCAATTGTAGCGAAAATGATTGTTGTTGTCGCTTTGAATACCTTGATGCAATGG
GTGAATCCATTGATTTATAACCGTCTAACGTTTGGTTATATTTACACATTGCGTCAAAAAGTCATGGAAAAATTAAACCA
GATGCCGATTTCTTATCTTGACAAGAAAAGTTCAGGTGATTTGGTTAGTCGTGTGACAACTGATGCCGAACAATTGAGCA
ATGGTCTGTTAATGGTGTTCAATCAATTTTTCATTGGTATTCTAACGATTATCATTACCATTGTGACAATGGCTGATATT
GATTTGTTAATGCTTGGTTTGGTGCTAATTTTAACACCATTATCACTTTTCTTAGCACGTTTTATCGCTCAAAAGAGTTA
TCATCTTTATCAAAATCAAACAAAATCACGCGGGCAACAAACGCAGTATATTGAAGAAATGATTCGTCAAGAAAGTTTAC
TCCACACCTTCAATGCGCAAGATATGGCTATTGACACTTTCACGACGATTAATGATACTTATGCTGATTACTCACAAGGA
GCTATTTTCTATTCTTCAACGGTTAATCCGTCAACGCGTTTCATTAATAGCTTGATTTATGCTCTTTTGGCAGGAGTAGG
GGCACTTCGGATTATGTCAGGTGCTTCTACAGTTGGGCAATTGACAACTTTCTTGAATTATGTCAATCAATACACCAAGC
CATTTAATGATATTTCATCCGTTTTGTCAGAATTGCAGAGCGCCATTGCCTGTGCAGAACGTCTCTACGCTATTTTAGAC
GAAGAAAATGAGCCTCTTCCAGTAAAAGCTCATCTTAATGCAGATAGTATCCAAGGACAAATTGAATTCAAAGATGTGTC
GTTTGGCTATACTAGCCAAAATACCTTGATTAACCACCTTAATTTATCAATCCCAGCGGCTTCAAAAGTGGCTATCGTTG
GACCAACGGGTGCAGGAAAATCAACTTTAATCAATCTTTTAATGCGTTTTTATGAAGTCAATAGCGGAGCTATTTATTTG
GATGGCGTTTCTATGGCAGATTATTCTGTGTCAGAATTGCGCCAACAAATCGGTATGGTATTGCAAGAAACGTGGCTGAA
AGTTGGAACGATTCACGATAATATTGCATATGGAAATCCTGATGCTACACGAGAAGAAGTCGTTGCTGCCGCAAAAGCAG
CCAATGCTGATTTCTTTATTCGTCAGTTACCAAATGGTTACGATACTTATCTGGCTGATGCAGGAGCATCATTGTCGCAA
GGACAACGTCAGCTGTTAACGATTGCTCGAATTTTTGTCAAACTACCAAAAATCTTAATTCTCGATGAAGCAACCTCATC
TATCGATACTCGGACAGAAGTATTGATCCAAGAAGCTTTTGAAAAATTAATGCAAGGAAGGACAAGTTTTATCATTGCAC
ACCGCTTGTCAACCATTCAATCAGCTGATTTTATTTTAGTCATGGTAGATGGTGACATTATTGAACATGGTACGCATGAC
GATTTAATGGCAAAACAAGGCGTTTATTACCAAATGCAAACAGCCCAAGCAGGGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(27-294)

ABC transporter (ABC_tran)

(358-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.694

100

0.379