Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BTR42_RS04970 Genome accession   NZ_CP018822
Coordinates   957584..959461 (+) Length   625 a.a.
NCBI ID   WP_012961810.1    Uniprot ID   A0A1H7UJS8
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 952584..964461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS04955 (BTR42_04635) - 953239..955158 (+) 1920 WP_077496654.1 ATP-binding cassette domain-containing protein -
  BTR42_RS04960 (BTR42_04640) - 955394..955840 (+) 447 WP_074656875.1 MarR family winged helix-turn-helix transcriptional regulator -
  BTR42_RS04965 (BTR42_04645) - 955833..957584 (+) 1752 WP_074656878.1 ABC transporter ATP-binding protein -
  BTR42_RS04970 (BTR42_04650) rcrQ 957584..959461 (+) 1878 WP_012961810.1 ABC transporter ATP-binding protein Regulator
  BTR42_RS04975 (BTR42_04655) - 959593..960009 (+) 417 WP_012961811.1 cupin domain-containing protein -
  BTR42_RS04980 (BTR42_04660) - 960146..961114 (+) 969 WP_014620029.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  BTR42_RS04985 (BTR42_04665) - 961146..962150 (+) 1005 WP_003064327.1 alpha-ketoacid dehydrogenase subunit beta -
  BTR42_RS13025 - 962204..962332 (+) 129 Protein_925 biotin/lipoyl-containing protein -
  BTR42_RS04990 (BTR42_04670) - 962522..963559 (+) 1038 Protein_926 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70030.69 Da        Isoelectric Point: 7.1513

>NTDB_id=176196 BTR42_RS04970 WP_012961810.1 957584..959461(+) (rcrQ) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MAQTKKEINKQDTLKRVLAYVLKNYKWRFLLVLVLILVTALCMVRFSLFMQTLIDSYITPLLAAKNPDFSGLAHAIFQLI
IIGIIGVLSSYTYNRLMVYVGQGTMRRIRIDLFTHMERLPIKYFDTHAHGDIMSIYTNDVDTLRQLISQSIPQVVNSFFS
IVVTFTSMLILNVPLSMLSLFMVVILLTVARKIASQSSKHFHNQQNDLGRVNGFIEEMMDGQKVVKVFNHEERAKEDFRK
INQQLRYSATNANIYANILMPVSANIGHISYVLCAMLGATLALHGYAGLTLGTLVSFLALNRSFTNPITQISQQINSVIM
AMAGADRVFNLLDAEVETDEGYVELVNATEDAAGNLQEVEETTGMWAWKHPHEDGTVTYHKQEGRVTFSDVTFGYNDDKM
VLHDINLFAEPGQKIAFVGSTGAGKTTITNLINRFYDIQEGKIHYDGINIRKIKKADLRRSLGIVLQDTHLFTGTVMDNI
RYGRLNATDDECIAAAKLANAHDFIKRLPEGYDTILTGDGSNLSQGQRQLLAIARAAVANPPALILDEATSSIDTRTEVH
VQEGMDALMKGRTTFVIAHRLSTVRNADCIMVLEQGRIIERGNHDELIAQKGRYYQLYTGNAISE

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=176196 BTR42_RS04970 WP_012961810.1 957584..959461(+) (rcrQ) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGGCTCAAACCAAAAAAGAAATTAATAAACAAGATACGCTAAAACGTGTGTTGGCTTATGTCTTGAAAAATTATAAATG
GCGCTTCTTGCTAGTATTGGTTTTGATTTTAGTAACAGCGCTTTGTATGGTACGCTTTAGTTTGTTCATGCAAACATTGA
TTGATAGTTATATTACACCTCTTTTAGCTGCTAAAAATCCAGACTTTTCAGGGTTAGCACACGCTATTTTTCAATTAATC
ATTATTGGTATCATTGGTGTTCTAAGTTCTTACACTTATAACCGTTTGATGGTTTATGTTGGACAAGGAACAATGCGTCG
TATTCGTATTGATTTGTTCACTCATATGGAACGCTTGCCAATCAAATATTTTGATACACATGCCCACGGTGATATCATGT
CTATCTATACTAACGACGTTGATACACTTCGTCAGTTGATTAGCCAAAGTATTCCGCAAGTGGTCAATTCATTCTTTTCA
ATCGTGGTGACTTTTACAAGCATGCTTATTCTTAACGTGCCATTGTCAATGTTATCACTATTTATGGTTGTGATTTTGTT
AACTGTTGCGCGTAAAATCGCTTCGCAATCGTCTAAACATTTCCATAACCAACAAAATGACCTTGGTCGTGTCAATGGTT
TCATTGAAGAAATGATGGACGGTCAAAAAGTGGTTAAAGTTTTCAATCACGAAGAACGTGCTAAAGAAGATTTCCGAAAA
ATCAATCAACAGCTCCGCTATTCTGCCACAAACGCCAATATCTATGCTAATATTTTGATGCCAGTATCAGCTAATATTGG
ACATATTTCCTATGTACTTTGTGCCATGCTTGGGGCAACTCTAGCACTTCATGGTTATGCTGGATTGACTTTGGGAACCT
TGGTTTCTTTCCTAGCGCTTAACCGTAGTTTTACAAACCCGATTACACAAATCAGTCAACAAATTAACTCAGTTATCATG
GCGATGGCTGGTGCTGACCGTGTCTTTAACCTACTTGATGCCGAAGTGGAAACTGATGAAGGTTATGTTGAATTGGTAAA
TGCTACTGAGGACGCTGCTGGTAATCTTCAAGAAGTTGAAGAAACAACTGGTATGTGGGCTTGGAAACATCCACACGAAG
ACGGGACTGTGACTTATCACAAGCAAGAAGGTCGTGTAACCTTCTCAGATGTAACCTTTGGTTATAACGATGATAAAATG
GTTTTACATGACATTAATTTGTTTGCGGAACCTGGTCAAAAAATTGCCTTTGTTGGGTCAACTGGTGCTGGTAAAACAAC
CATTACAAACTTGATTAACCGTTTTTACGATATTCAAGAAGGTAAGATTCATTACGACGGTATTAACATTCGTAAAATCA
AAAAAGCTGATCTTCGTCGTAGTTTAGGGATTGTATTGCAAGATACGCACCTCTTTACAGGAACGGTTATGGATAATATC
CGTTACGGACGTTTGAATGCGACTGATGACGAATGTATTGCTGCGGCTAAGTTAGCTAATGCACATGATTTCATTAAACG
TTTGCCAGAAGGTTACGATACCATTTTGACAGGTGACGGAAGTAATTTATCTCAAGGACAACGTCAATTGCTTGCGATTG
CACGTGCAGCCGTGGCAAATCCACCTGCTTTGATTTTGGATGAAGCAACATCATCAATCGATACGCGTACCGAAGTTCAC
GTCCAAGAAGGTATGGATGCGTTGATGAAAGGTCGTACAACCTTTGTTATCGCTCACCGCTTGTCAACAGTTCGCAATGC
GGATTGTATCATGGTTCTTGAACAAGGACGTATCATCGAACGTGGTAACCACGACGAATTGATTGCGCAAAAAGGTCGTT
ATTACCAACTTTACACAGGTAACGCCATTAGCGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(402-551)

ABC transporter transmembrane region (ABC_membrane)

(30-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H7UJS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.516

99.2

0.392