Detailed information NTG0176046

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: A3772_RS08800
• Genome accession: NZ_CP015004
• Coordinates: 1669733..1670512 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain SZMC 6179J isolate B23
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1664733..1675512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A3772_RS08780 (A3772_08780)	trmFO	1665426..1666733 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
A3772_RS08785 (A3772_08785)	xerC	1666801..1667715 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
A3772_RS08790 (A3772_08790)	clpQ	1667728..1668273 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
A3772_RS08795 (A3772_08795)	hslU	1668290..1669693 (+)	1404	WP_003245556.1	HslU--HslV peptidase ATPase subunit	-
A3772_RS08800 (A3772_08800)	codY	1669733..1670512 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
A3772_RS08805 (A3772_08805)	flgB	1670892..1671281 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
A3772_RS08810 (A3772_08810)	flgC	1671281..1671733 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
A3772_RS08815 (A3772_08815)	fliE	1671744..1672064 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
A3772_RS08820 (A3772_08820)	fliF	1672110..1673720 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
A3772_RS08825 (A3772_08825)	fliG	1673733..1674749 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
A3772_RS08830 (A3772_08830)	fliH	1674742..1675494 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=176046 A3772_RS08800 WP_003220850.1 1669733..1670512(+) (codY) [Bacillus subtilis strain SZMC 6179J isolate B23]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=176046 A3772_RS08800 WP_003220850.1 1669733..1670512(+) (codY) [Bacillus subtilis strain SZMC 6179J isolate B23]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467