Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   BTV16_RS01465 Genome accession   NZ_CP018804
Coordinates   284034..284309 (+) Length   91 a.a.
NCBI ID   WP_411814732.1    Uniprot ID   -
Organism   Histophilus somni strain USDA-ARS-USMARC-63368     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 279034..289309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV16_RS01425 (BTV16_01420) tolB 279632..280936 (+) 1305 WP_075293669.1 Tol-Pal system beta propeller repeat protein TolB -
  BTV16_RS01430 (BTV16_01425) pal 280946..281401 (+) 456 WP_075293668.1 peptidoglycan-associated lipoprotein Pal -
  BTV16_RS01450 (BTV16_01445) comN 282075..282602 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BTV16_RS01455 (BTV16_01450) comO 282651..283328 (+) 678 WP_081376624.1 type II secretion system protein J Machinery gene
  BTV16_RS01460 (BTV16_01455) comP 283331..284011 (+) 681 WP_075293666.1 DUF2572 family protein Machinery gene
  BTV16_RS01465 (BTV16_01460) comQ 284034..284309 (+) 276 WP_411814732.1 DUF5374 domain-containing protein Machinery gene
  BTV16_RS01470 (BTV16_01465) recC 284362..287796 (+) 3435 WP_075293665.1 exodeoxyribonuclease V subunit gamma -
  BTV16_RS01475 (BTV16_01470) ruvA 287875..288489 (+) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10862.61 Da        Isoelectric Point: 9.0489

>NTDB_id=175873 BTV16_RS01465 WP_411814732.1 284034..284309(+) (comQ) [Histophilus somni strain USDA-ARS-USMARC-63368]
MITLLVTMMIFSTLFLFVNQWVSYQRKSAVNIYLRYQALQIAENQHQRLFLEPHFHCPHNIEQNGYKFKINCEGKNVRVS
YANQQVNLLLD

Nucleotide


Download         Length: 276 bp        

>NTDB_id=175873 BTV16_RS01465 WP_411814732.1 284034..284309(+) (comQ) [Histophilus somni strain USDA-ARS-USMARC-63368]
TTGATCACGTTATTAGTCACAATGATGATATTTTCTACATTATTTTTATTTGTTAATCAATGGGTTAGTTATCAAAGAAA
AAGTGCGGTAAATATTTATCTACGTTATCAAGCTTTGCAAATCGCTGAAAATCAACATCAACGCTTATTTCTAGAACCGC
ATTTTCATTGTCCGCATAATATCGAGCAAAATGGTTATAAGTTTAAGATCAATTGTGAAGGTAAGAATGTACGAGTTTCT
TATGCAAATCAACAAGTAAATTTATTGCTTGATTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(48-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

47.059

93.407

0.44

Multiple sequence alignment