Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   A2I97_RS08040 Genome accession   NZ_CP014990
Coordinates   1583022..1583801 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain KD1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578022..1588801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I97_RS08020 (A2I97_07775) trmFO 1578709..1580016 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  A2I97_RS08025 (A2I97_07780) xerC 1580086..1581003 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  A2I97_RS08030 (A2I97_07785) hslV 1581019..1581564 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  A2I97_RS08035 (A2I97_07790) hslU 1581581..1582984 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  A2I97_RS08040 (A2I97_07795) codY 1583022..1583801 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  A2I97_RS08045 (A2I97_07800) flgB 1584155..1584544 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  A2I97_RS08050 (A2I97_07805) flgC 1584544..1584996 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  A2I97_RS08055 (A2I97_07810) fliE 1585007..1585327 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  A2I97_RS08060 (A2I97_07815) fliF 1585370..1586980 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  A2I97_RS08065 (A2I97_07820) fliG 1586993..1588009 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  A2I97_RS08070 (A2I97_07825) fliH 1588002..1588757 (+) 756 WP_070081820.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=175769 A2I97_RS08040 WP_003154263.1 1583022..1583801(+) (codY) [Bacillus velezensis strain KD1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=175769 A2I97_RS08040 WP_003154263.1 1583022..1583801(+) (codY) [Bacillus velezensis strain KD1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment