NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	BBX32_RS09680	Genome accession	NZ_CP018677
Coordinates	1980399..1981100 (-)	Length	233 a.a.
NCBI ID	WP_000594588.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain LAC4
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1975399..1986100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BBX32_RS09650 (BBX32_09605)	-	1975706..1976149 (-)	444	WP_001246675.1	SRPBCC family protein	-
BBX32_RS09655 (BBX32_09610)	tadA	1976219..1976722 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
BBX32_RS09660 (BBX32_09615)	-	1976729..1977853 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
BBX32_RS09665 (BBX32_09620)	ung	1977850..1978563 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
BBX32_RS09670 (BBX32_09625)	-	1978614..1979210 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
BBX32_RS09675 (BBX32_09630)	gspK	1979440..1980399 (-)	960	WP_001218621.1	type II secretion system minor pseudopilin GspK	-
BBX32_RS09680 (BBX32_09635)	xcpW	1980399..1981100 (-)	702	WP_000594588.1	type II secretion system minor pseudopilin GspJ	Machinery gene
BBX32_RS09685 (BBX32_09640)	xcpV	1981100..1981480 (-)	381	WP_000836909.1	type II secretion system minor pseudopilin GspI	Machinery gene
BBX32_RS09690 (BBX32_09645)	-	1981470..1982024 (-)	555	WP_000841372.1	type II secretion system protein	-
BBX32_RS09695 (BBX32_09650)	-	1982034..1982642 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
BBX32_RS09700 (BBX32_09655)	-	1982680..1983453 (-)	774	WP_000497301.1	TatD family hydrolase	-
BBX32_RS09705 (BBX32_09660)	-	1983471..1983812 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
BBX32_RS09710 (BBX32_09665)	-	1983824..1984804 (-)	981	WP_001075419.1	DNA polymerase III subunit delta'	-
BBX32_RS09715 (BBX32_09670)	kdsB	1984816..1985577 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26625.55 Da Isoelectric Point: 9.3468

                                >NTDB_id=175464 BBX32_RS09680 WP_000594588.1 1980399..1981100(-) (xcpW) [Acinetobacter baumannii strain LAC4]

MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQDGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=175464 BBX32_RS09680 WP_000594588.1 1980399..1981100(-) (xcpW) [Acinetobacter baumannii strain LAC4]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATACCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGACGGTAATTCATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991

Detailed information NTG0175464