Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AYO71_RS04780 Genome accession   NZ_CP014947
Coordinates   1072267..1073331 (+) Length   354 a.a.
NCBI ID   WP_041477568.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain D26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067267..1078331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYO71_RS04770 (AYO71_04770) - 1068074..1069342 (+) 1269 WP_016772053.1 malic enzyme-like NAD(P)-binding protein -
  AYO71_RS04775 (AYO71_04775) - 1069603..1072047 (-) 2445 WP_371924026.1 penicillin-binding protein 1A -
  AYO71_RS04780 (AYO71_04780) comM 1072267..1073331 (+) 1065 WP_041477568.1 pilus assembly protein PilM Machinery gene
  AYO71_RS04785 (AYO71_04785) - 1073331..1073897 (+) 567 WP_041477569.1 PilN domain-containing protein -
  AYO71_RS04790 (AYO71_04790) pilO 1073894..1074517 (+) 624 WP_041477570.1 type 4a pilus biogenesis protein PilO -
  AYO71_RS04795 (AYO71_04795) - 1074514..1075038 (+) 525 WP_041477571.1 pilus assembly protein PilP -
  AYO71_RS04800 (AYO71_04800) pilQ 1075052..1077130 (+) 2079 WP_041477572.1 type IV pilus secretin PilQ Machinery gene
  AYO71_RS04805 (AYO71_04805) aroK 1077135..1077653 (+) 519 WP_024011270.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38035.55 Da        Isoelectric Point: 4.7453

>NTDB_id=175285 AYO71_RS04780 WP_041477568.1 1072267..1073331(+) (comM) [Pseudomonas koreensis strain D26]
MLGLFNKKTNALLGIDISSTSVKLLELSRQGERYRVEAYAVEPLPANAVVEKNIADLEGVGQALSRLLVKARTGVKSVAV
AVAGSAVITKVIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPDRVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATHLAASQERLTVAVVDIGATMTTLSVLHNGKIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEQRLDTPTQVANP
FADMALGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=175285 AYO71_RS04780 WP_041477568.1 1072267..1073331(+) (comM) [Pseudomonas koreensis strain D26]
GTGCTGGGACTCTTCAATAAAAAGACCAATGCGTTACTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTGCTGGAACT
GAGCCGTCAGGGCGAGCGCTACCGGGTCGAGGCCTACGCGGTGGAGCCGTTGCCGGCGAACGCTGTGGTCGAAAAGAACA
TCGCCGACCTCGAAGGCGTCGGCCAGGCGCTGAGCCGGTTGCTGGTGAAAGCGCGAACCGGGGTCAAGAGCGTGGCGGTG
GCAGTGGCCGGTTCGGCGGTGATCACCAAGGTCATCGAGATGGACGCCGGGCTGTCCGACGACGAAATGGAAAACCAGCT
CAAGATCGAGGCCGACCAATACATTCCCTATCCGCTGGACGAAGTCGCCATCGACTTTGAAGTCCAGGGCGTCTCGCCGC
GCAACCCGGATCGGGTCAACGTGCTGCTTGCCGCCTGTCGCAAGGAAAACGTCGAGGTGCGTGAAGCGGCGCTGGCGCTC
GCCGGCCTGACCGCGCGGGTGGTGGACGTCGAGGCCTACGCCCTCGAGCGCTCGTTCGGTCTGCTGGCGACGCATCTGGC
GGCCTCCCAGGAGCGCCTGACCGTGGCGGTGGTCGACATCGGTGCGACCATGACCACCCTCAGCGTGCTGCACAACGGCA
AGATCATCTACACCCGTGAGCAATTGTTCGGCGGACGCCAGCTTACCGAGGAGATCCAGCGCCGCTACGGCCTCACGGTC
GAACAGGCGGGCCTGGCGAAAAAACAGGGCGGGCTGCCTGACGATTACGTCAGCGAGGTCTTGCAGCCATTTCGCGAGGC
GCTGGTGCAGCAAGTCTCGCGTTCGCTGCAGTTCTTCTTCGCCTCCGGCCAGTACAACGCGGTCGACCATATCCTGTTGG
CCGGCGGCACCGCCTCGGTGCCCGGCCTGGACCGTCTGATCGAACAGCGTCTGGACACGCCGACGCAGGTCGCCAACCCA
TTCGCCGACATGGCCTTGGGCAGCAAGGTCAACGCAGGAGCGCTGGCCAGCGACGCGCCAGCCTTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

48.87

100

0.489

Multiple sequence alignment