Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   BS103_RS11830 Genome accession   NZ_CP018332
Coordinates   2429702..2431459 (-) Length   585 a.a.
NCBI ID   WP_032014373.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A1296     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2424702..2436459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS103_RS11800 (BS103_11770) - 2425291..2425842 (+) 552 WP_004739442.1 tetratricopeptide repeat protein -
  BS103_RS11805 (BS103_11775) - 2425864..2426763 (-) 900 WP_032014375.1 NUDIX domain-containing protein -
  BS103_RS11810 (BS103_11780) hemP 2426900..2427070 (+) 171 WP_000993415.1 hemin uptake protein HemP -
  BS103_RS11815 (BS103_11785) - 2427136..2428494 (-) 1359 WP_001257359.1 sensor histidine kinase -
  BS103_RS11820 (BS103_11790) - 2428491..2429153 (-) 663 WP_001221454.1 response regulator transcription factor -
  BS103_RS11825 (BS103_11795) - 2429261..2429620 (-) 360 WP_000783090.1 NirD/YgiW/YdeI family stress tolerance protein -
  BS103_RS11830 (BS103_11800) pilB 2429702..2431459 (-) 1758 WP_032014373.1 GspE/PulE family protein Machinery gene
  BS103_RS11835 (BS103_11805) - 2431747..2433015 (+) 1269 WP_001052952.1 MgtC/SapB family protein -
  BS103_RS11840 (BS103_11810) tsaA 2433012..2433731 (-) 720 WP_078202775.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  BS103_RS11845 (BS103_11815) - 2433836..2434615 (+) 780 WP_000718711.1 ferredoxin--NADP reductase -
  BS103_RS11850 (BS103_11820) - 2434669..2435538 (-) 870 WP_000117591.1 PhzF family phenazine biosynthesis protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66834.62 Da        Isoelectric Point: 7.0124

>NTDB_id=175029 BS103_RS11830 WP_032014373.1 2429702..2431459(-) (pilB) [Acinetobacter baumannii strain A1296]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFAERAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHGDRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDVAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPNCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=175029 BS103_RS11830 WP_032014373.1 2429702..2431459(-) (pilB) [Acinetobacter baumannii strain A1296]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCACTTTAATCTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGAGCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCACAT
TTTAGCTGTAGAAGTCCATGGGGACCGAATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCAAAAAAAATTGAACGTGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAGAAAGACGTAGCTCATGACCGTGATAACAAAGGTGTAGAAGCGCTTTTACA
ACTTGGCGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTGGTAGACTGGATTTTGCAATTTGCATTTG
AACAGAGCGCTAGTGACATTCACATGGAACCACGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAATATGCCTTCAAATACCCTGACTGCCGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGATTAAAAACACGTACGCCGAAAGGACAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTGTTAGTACGTTCCTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAACAATGGCAGCGTATTACGCAAAATAGTCACGGTATTATTTTAGTTACGGGGCCAACAGGTTC
TGGTAAAACCACAACGTTATATTCTTCTTTAAAGCAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAAGCTGC
ACTCACAGGCCATTTGGTATTATCAACTTTACATACCAATGATGCGCCGTCTAGTTTGACCCGTTTACATGATTTAGGCG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGCGTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCAAACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTGCTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)

Type II/IV secretion system protein (T2SSE)

(209-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.605

100

0.381