Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   A3L20_RS20245 Genome accession   NZ_CP014847
Coordinates   4049324..4050103 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain HD12     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 4026949..4066961 4049324..4050103 within 0


Gene organization within MGE regions


Location: 4026949..4066961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3L20_RS20145 (A3L20_20145) rpsO 4027947..4028216 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  A3L20_RS20150 (A3L20_20150) ribF 4028317..4029288 (-) 972 WP_000766703.1 bifunctional riboflavin kinase/FAD synthetase -
  A3L20_RS20155 (A3L20_20155) truB 4029332..4030255 (-) 924 WP_000399365.1 tRNA pseudouridine(55) synthase TruB -
  A3L20_RS20160 (A3L20_20160) rbfA 4030342..4030698 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  A3L20_RS20165 (A3L20_20165) - 4030714..4030995 (-) 282 WP_000634349.1 DUF503 domain-containing protein -
  A3L20_RS20170 (A3L20_20170) infB 4030992..4033058 (-) 2067 WP_000036346.1 translation initiation factor IF-2 -
  A3L20_RS20175 (A3L20_20175) - 4033063..4033374 (-) 312 WP_001286522.1 YlxQ family RNA-binding protein -
  A3L20_RS20180 (A3L20_20180) rnpM 4033375..4033647 (-) 273 WP_000071123.1 RNase P modulator RnpM -
  A3L20_RS20185 (A3L20_20185) nusA 4033659..4034765 (-) 1107 WP_000102599.1 transcription termination factor NusA -
  A3L20_RS20190 (A3L20_20190) rimP 4034783..4035253 (-) 471 WP_000359095.1 ribosome maturation factor RimP -
  A3L20_RS20195 (A3L20_20195) - 4035587..4039888 (-) 4302 WP_000059996.1 PolC-type DNA polymerase III -
  A3L20_RS20200 (A3L20_20200) - 4040013..4041713 (-) 1701 WP_000814295.1 proline--tRNA ligase -
  A3L20_RS20205 (A3L20_20205) rseP 4041823..4043079 (-) 1257 WP_001090241.1 RIP metalloprotease RseP -
  A3L20_RS20210 (A3L20_20210) dxr 4043097..4044239 (-) 1143 WP_000790358.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  A3L20_RS20215 (A3L20_20215) cdsA 4044263..4045054 (-) 792 WP_000813589.1 phosphatidate cytidylyltransferase -
  A3L20_RS20220 (A3L20_20220) uppS 4045072..4045848 (-) 777 WP_000971296.1 isoprenyl transferase -
  A3L20_RS20225 (A3L20_20225) frr 4045934..4046491 (-) 558 WP_000531505.1 ribosome recycling factor -
  A3L20_RS20230 (A3L20_20230) pyrH 4046494..4047216 (-) 723 WP_000042669.1 UMP kinase -
  A3L20_RS20235 (A3L20_20235) tsf 4047283..4048170 (-) 888 WP_001018576.1 translation elongation factor Ts -
  A3L20_RS20240 (A3L20_20240) rpsB 4048274..4048975 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  A3L20_RS20245 (A3L20_20245) codY 4049324..4050103 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  A3L20_RS20250 (A3L20_20250) hslU 4050181..4051572 (-) 1392 WP_000550084.1 ATP-dependent protease ATPase subunit HslU -
  A3L20_RS20255 (A3L20_20255) hslV 4051595..4052137 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  A3L20_RS20260 (A3L20_20260) xerC 4052180..4053079 (-) 900 WP_001101244.1 tyrosine recombinase XerC -
  A3L20_RS20265 (A3L20_20265) trmFO 4053145..4054449 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  A3L20_RS20270 (A3L20_20270) topA 4054498..4056576 (-) 2079 WP_001286957.1 type I DNA topoisomerase -
  A3L20_RS20275 (A3L20_20275) dprA 4056721..4057590 (-) 870 WP_000818044.1 DNA-processing protein DprA -
  A3L20_RS20280 (A3L20_20280) sucD 4057679..4058581 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  A3L20_RS20285 (A3L20_20285) sucC 4058601..4059761 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  A3L20_RS20290 (A3L20_20290) - 4059955..4060728 (-) 774 WP_016077303.1 ribonuclease HII -
  A3L20_RS20295 (A3L20_20295) ylqF 4060785..4061675 (-) 891 WP_000236702.1 ribosome biogenesis GTPase YlqF -
  A3L20_RS20300 (A3L20_20300) lepB 4061696..4062247 (-) 552 WP_000711853.1 signal peptidase I -
  A3L20_RS20305 (A3L20_20305) rplS 4062349..4062693 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  A3L20_RS20310 (A3L20_20310) trmD 4062840..4063574 (-) 735 WP_000686901.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  A3L20_RS20315 (A3L20_20315) rimM 4063574..4064089 (-) 516 WP_000170274.1 ribosome maturation factor RimM -
  A3L20_RS20320 (A3L20_20320) - 4064210..4064437 (-) 228 WP_000737393.1 KH domain-containing protein -
  A3L20_RS20325 (A3L20_20325) rpsP 4064452..4064724 (-) 273 WP_000268748.1 30S ribosomal protein S16 -
  A3L20_RS20330 (A3L20_20330) ffh 4064826..4066175 (-) 1350 WP_000863460.1 signal recognition particle protein -
  A3L20_RS20335 (A3L20_20335) - 4066188..4066520 (-) 333 WP_000891062.1 putative DNA-binding protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=174722 A3L20_RS20245 WP_000421290.1 4049324..4050103(-) (codY) [Bacillus thuringiensis strain HD12]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=174722 A3L20_RS20245 WP_000421290.1 4049324..4050103(-) (codY) [Bacillus thuringiensis strain HD12]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTGGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment