Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B14_RS13150 Genome accession   NZ_CP014842
Coordinates   2519112..2519891 (-) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain SCDB 14     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2514112..2524891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS13120 (B14_02619) fliH 2514153..2514920 (-) 768 WP_016885763.1 flagellar assembly protein FliH -
  B14_RS13125 (B14_02620) fliG 2514904..2515920 (-) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  B14_RS13130 (B14_02621) fliF 2515934..2517535 (-) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  B14_RS13135 (B14_02622) fliE 2517586..2517903 (-) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  B14_RS13140 (B14_02623) flgC 2517917..2518369 (-) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  B14_RS13145 (B14_02624) flgB 2518369..2518758 (-) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  B14_RS13150 (B14_02626) codY 2519112..2519891 (-) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B14_RS13155 (B14_02627) hslU 2519930..2521333 (-) 1404 WP_003181754.1 HslU--HslV peptidase ATPase subunit -
  B14_RS13160 (B14_02628) hslV 2521350..2521895 (-) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  B14_RS13165 (B14_02629) xerC 2521909..2522823 (-) 915 WP_003181750.1 tyrosine recombinase XerC -
  B14_RS13170 (B14_02630) trmFO 2522890..2524194 (-) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=174668 B14_RS13150 WP_003181756.1 2519112..2519891(-) (codY) [Bacillus licheniformis strain SCDB 14]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=174668 B14_RS13150 WP_003181756.1 2519112..2519891(-) (codY) [Bacillus licheniformis strain SCDB 14]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment