Detailed information NTG0174542

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BCBMB205_RS08220
• Genome accession: NZ_CP014838
• Coordinates: 1614894..1615673 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain CBMB205
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1609894..1620673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCBMB205_RS08200 (BCBMB205_16460)	trmFO	1610581..1611888 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
BCBMB205_RS08205 (BCBMB205_16470)	xerC	1611958..1612875 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
BCBMB205_RS08210 (BCBMB205_16480)	hslV	1612891..1613436 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
BCBMB205_RS08215 (BCBMB205_16490)	hslU	1613453..1614856 (+)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
BCBMB205_RS08220 (BCBMB205_16500)	codY	1614894..1615673 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BCBMB205_RS08225 (BCBMB205_16510)	flgB	1616027..1616416 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
BCBMB205_RS08230 (BCBMB205_16520)	flgC	1616416..1616868 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
BCBMB205_RS08235 (BCBMB205_16530)	fliE	1616879..1617199 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
BCBMB205_RS08240 (BCBMB205_16540)	fliF	1617242..1618852 (+)	1611	WP_032874889.1	flagellar basal-body MS-ring/collar protein FliF	-
BCBMB205_RS08245 (BCBMB205_16550)	fliG	1618865..1619881 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
BCBMB205_RS08250 (BCBMB205_16560)	fliH	1619874..1620629 (+)	756	WP_032874891.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=174542 BCBMB205_RS08220 WP_003154263.1 1614894..1615673(+) (codY) [Bacillus velezensis strain CBMB205]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=174542 BCBMB205_RS08220 WP_003154263.1 1614894..1615673(+) (codY) [Bacillus velezensis strain CBMB205]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471