Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ATY39_RS08365 Genome accession   NZ_CP014806
Coordinates   1692589..1694946 (-) Length   785 a.a.
NCBI ID   WP_066788450.1    Uniprot ID   A0A143HDA1
Organism   Rummeliibacillus stabekisii strain PP9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1687589..1699946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY39_RS08350 (ATY39_08350) dtd 1689268..1689714 (-) 447 WP_066788445.1 D-aminoacyl-tRNA deacylase -
  ATY39_RS08355 (ATY39_08355) - 1689733..1691925 (-) 2193 WP_066788448.1 RelA/SpoT family protein -
  ATY39_RS08360 (ATY39_08360) - 1692086..1692598 (-) 513 WP_066788449.1 adenine phosphoribosyltransferase -
  ATY39_RS08365 (ATY39_08365) recJ 1692589..1694946 (-) 2358 WP_066788450.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ATY39_RS08370 (ATY39_08370) - 1695067..1696482 (-) 1416 WP_066788451.1 S8 family serine peptidase -
  ATY39_RS08375 (ATY39_08375) secDF 1696617..1698884 (-) 2268 WP_066788454.1 protein translocase subunit SecDF -
  ATY39_RS08380 (ATY39_08380) - 1699435..1699734 (-) 300 WP_066788457.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 89056.25 Da        Isoelectric Point: 4.8022

>NTDB_id=174397 ATY39_RS08365 WP_066788450.1 1692589..1694946(-) (recJ) [Rummeliibacillus stabekisii strain PP9]
MTATEKRWRINRPDERLVEMLEKELRLSPISAKILVARGFDTVESARAFLMVDEHSVHDPYDLYGMHDAVDRIKQAVQNK
EKVLIYGDYDADGITSTTVLKTSLVDLGADVHHIIPNRFIDGYGPSERLFRQAYEDGFQLIITVDNGIAGNHEVKVAKEL
GMDIIVTDHHEPSEELPNADVIIHPRHPDGHYPFGELAGVGVAFKVAHALYGELPQHLLPFVAIGTVADLVPLLDENRYL
VKAGIEALQQSKHPAIQALCQIAGVKAQDIDEETIGFGFAPRLNALGRLGDAAPGVDFLMTQDKEEAQSMANYLNEQNKE
RQEIVANITEQAIEMVENDPEIGDAKVLVIADEGWNPGVVGIVASRLVERYYKPAIILSIDLEKGTAKGSARSIEGFHMY
KELAKNSEILLAFGGHPMAAGMTLAVEEIDELRTRLDEQARAGLTDEDFTPVLNIDIPLAVEEIDVTSIEDVRRLSPFGT
SFAKPVYAIENATIQSMRKIGADENHIKLQIASRNGDLDAVGFHKGYLADELTYGIKINFAGDLQINEWNGRKKPQLMLA
DVQTDEWQLFDLRGIRQVSRWLQSIPLEKVTFIAFQNRTQQYFDSLIPAEIMIYEDKMTPQHIENYVVLLDLPTNASLLE
KLLEEANPRRVYAHFYIPESHYFDAMPTREQFVWYYSFLKKRRTFHLKEHLMELAKHKGWSRDSLIFMTQVFFELGFVTI
ENGLAQIVDNPPKKDLTSANIYQERQQQMELEQTLLYAPYKDLREWFDSRMKSQTVSEEEHSKWI

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=174397 ATY39_RS08365 WP_066788450.1 1692589..1694946(-) (recJ) [Rummeliibacillus stabekisii strain PP9]
ATGACAGCAACAGAGAAGAGATGGCGTATCAATCGCCCTGATGAACGACTTGTGGAAATGCTAGAAAAAGAGCTTCGCTT
ATCACCTATCTCAGCAAAAATATTAGTCGCACGCGGTTTTGACACTGTTGAATCTGCGCGTGCTTTTTTAATGGTCGATG
AACATTCAGTGCACGATCCTTACGATTTGTATGGTATGCACGATGCAGTAGATCGTATAAAACAAGCGGTACAAAATAAA
GAAAAAGTTTTAATATACGGGGACTATGACGCCGATGGCATTACAAGCACTACTGTTCTAAAAACATCTTTAGTAGATTT
GGGAGCTGATGTCCATCACATTATTCCTAATCGTTTTATTGATGGATATGGACCAAGTGAGCGATTGTTTCGACAAGCAT
ATGAAGATGGGTTTCAACTGATTATTACTGTCGATAATGGAATCGCCGGCAACCATGAAGTGAAAGTTGCTAAAGAGTTG
GGGATGGATATCATAGTGACAGATCACCATGAGCCTAGTGAGGAGTTGCCTAATGCCGATGTGATTATCCACCCGAGACA
TCCGGATGGCCATTATCCTTTTGGAGAGCTTGCTGGTGTAGGGGTAGCATTTAAAGTAGCACATGCGCTCTACGGTGAGT
TGCCGCAACATCTCCTACCCTTTGTCGCGATTGGTACAGTTGCCGATTTGGTGCCATTATTGGATGAAAATCGTTATTTA
GTGAAAGCGGGAATAGAAGCGCTTCAACAATCTAAACACCCTGCTATTCAAGCACTTTGCCAAATTGCTGGTGTTAAAGC
ACAAGATATTGATGAAGAGACAATTGGTTTTGGTTTTGCTCCACGGCTAAATGCATTAGGAAGACTCGGAGATGCTGCAC
CGGGGGTCGACTTCTTAATGACGCAGGATAAAGAAGAAGCACAGTCTATGGCGAACTATTTAAATGAACAAAATAAAGAA
CGCCAAGAAATCGTGGCGAATATTACCGAGCAGGCAATTGAAATGGTGGAGAATGATCCTGAGATAGGCGATGCAAAAGT
ACTGGTCATAGCTGATGAAGGTTGGAACCCAGGTGTTGTTGGTATAGTCGCATCAAGGCTTGTAGAAAGATACTATAAAC
CGGCAATTATACTCTCAATAGATCTCGAAAAAGGGACTGCTAAAGGTTCTGCCCGCAGTATTGAAGGCTTCCATATGTAT
AAGGAGCTTGCGAAAAATAGCGAAATATTGCTAGCATTTGGCGGTCATCCCATGGCAGCAGGAATGACGCTTGCTGTAGA
AGAAATTGATGAGCTCCGCACCCGCCTTGATGAACAAGCGAGGGCAGGTTTAACAGATGAAGACTTTACTCCAGTCCTAA
ATATTGATATTCCGCTTGCTGTAGAGGAGATTGATGTTACTTCTATTGAAGATGTACGTCGTTTGTCTCCATTTGGTACT
AGTTTTGCAAAGCCAGTCTATGCGATTGAAAATGCAACAATCCAGTCAATGCGCAAAATTGGAGCAGACGAGAATCATAT
CAAACTCCAAATCGCATCCAGGAATGGCGATTTAGATGCAGTTGGTTTTCATAAAGGGTATTTGGCCGATGAATTGACGT
ATGGCATTAAAATAAATTTTGCAGGCGATTTGCAGATCAACGAATGGAATGGCCGGAAAAAACCCCAGCTTATGCTTGCT
GATGTCCAAACAGATGAATGGCAATTATTTGATCTACGGGGCATCCGCCAAGTTTCGAGATGGCTTCAGAGTATTCCTTT
AGAAAAAGTAACATTTATCGCTTTTCAAAACAGAACCCAGCAGTATTTTGATTCCCTCATACCTGCTGAAATAATGATTT
ATGAAGATAAAATGACTCCGCAGCATATAGAAAATTATGTTGTGCTGCTCGATTTACCAACAAACGCTTCACTGCTCGAA
AAATTATTAGAAGAAGCAAATCCAAGACGTGTATATGCCCATTTTTATATTCCAGAGTCACATTACTTTGATGCTATGCC
GACAAGAGAGCAATTTGTTTGGTACTATTCCTTCCTAAAGAAAAGGCGTACATTCCATCTGAAAGAACATTTAATGGAAT
TGGCAAAACATAAAGGCTGGAGCCGTGATTCGTTAATTTTTATGACACAGGTGTTTTTTGAACTAGGATTTGTTACAATA
GAAAATGGTCTCGCTCAAATTGTTGACAATCCACCGAAAAAGGATTTAACAAGCGCGAACATTTATCAAGAACGGCAGCA
GCAAATGGAATTGGAACAAACTTTATTGTATGCGCCTTATAAGGATTTAAGAGAGTGGTTTGACTCGCGGATGAAGAGTC
AAACAGTTTCTGAGGAGGAACATAGCAAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-767)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143HDA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.166

99.236

0.488

Multiple sequence alignment