Detailed information NTG0174389

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ATY39_RS04010
• Genome accession: NZ_CP014806
• Coordinates: 847973..850429 (+)
• Length: 818 a.a.
• NCBI ID: WP_066786171.1
• Uniprot ID: A0A143HAD3
• Organism: Rummeliibacillus stabekisii strain PP9
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 842973..855429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATY39_RS03990 (ATY39_03990)	cymR	844424..844843 (+)	420	WP_066786159.1	cysteine metabolism transcriptional regulator CymR	-
ATY39_RS03995 (ATY39_03995)	-	844996..846138 (+)	1143	WP_066786161.1	cysteine desulfurase family protein	-
ATY39_RS04000 (ATY39_04000)	mnmA	846158..847279 (+)	1122	WP_066786165.1	tRNA 2-thiouridine(34) synthase MnmA	-
ATY39_RS04005 (ATY39_04005)	-	847293..847952 (+)	660	WP_066786167.1	tetratricopeptide repeat protein	-
ATY39_RS04010 (ATY39_04010)	recD2	847973..850429 (+)	2457	WP_066786171.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ATY39_RS04015 (ATY39_04015)	alaS	850746..853409 (+)	2664	WP_066786174.1	alanine--tRNA ligase	-
ATY39_RS04020 (ATY39_04020)	-	853483..853749 (+)	267	WP_066786177.1	IreB family regulatory phosphoprotein	-
ATY39_RS04025 (ATY39_04025)	ruvX	853752..854171 (+)	420	WP_066786180.1	Holliday junction resolvase RuvX	-
ATY39_RS04030 (ATY39_04030)	-	854181..854468 (+)	288	WP_066786183.1	DUF1292 domain-containing protein	-
ATY39_RS04035 (ATY39_04035)	-	854593..854886 (+)	294	WP_066786187.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 818 a.a.
• Molecular weight: 91046.95 Da
• Isoelectric Point: 4.7566

>NTDB_id=174389 ATY39_RS04010 WP_066786171.1 847973..850429(+) (recD2) [Rummeliibacillus stabekisii strain PP9]
MAENLSLFSDEPLFIVGRPVVTIFHNAQNLFSIIKLKIQETNTDYKEKEIIVAGYFPAVSEEALYRYTGQLKQHPKYGLQ
FQAATFEKEIPATETGVVQYLSSDLFPGIGHRTAETIVQQLGADAIKTIIENPDVLDDVPRLTEDKKQTLRSVLEQNLGL
DRIMIQLNEWGFGAQIAVKIYQMYEGETLQVLQKNPYRLIEDIEGIGFQRADELGARLQITGNHPDRIKASILHLLNTAS
LSEGHVFLDAREILPASKAMLESSQSCTIEYDDISQAIIELGENGKVCGEETRVYLPSLYYSEIGIASKITELAQKNEEH
SSFPSSEIRKVIGEAEERFGVTYADTQVKAIETAINSAVMILTGGPGTGKTTVVRGIVDVYAELHGLSLNPKDYAEKEEA
FPIVLAAPTGRAAKRLSESTELPAMTIHRLLGFTGQEKEEDVEREVMGRLIIVDEMSMVDTWLAHQLLRALNDDCQVIFV
GDQDQLPPVGPGQVLKDLLASKAIPTVELTDVYRQSEGSSIIQLAHEMKRGTVPQDLMVKTSDRSFIRATQDQIADVVGQ
VVKSAINKGFSIHDVQVLAPMYRGNAGIDAMNKMLQELLNPKKSQKTKEIAFGDTIYRIGDKVLQLVNQPNNNVFNGDMG
EVISIVKAKETIEKTDLMVVSFDGIEVTYQKSDLNQVTLAYCCSIHKSQGSEFPMVIMPIVRGYSKMLRKNLLYTGITRA
KNFLILCGEPDTFVYGFQKTDDMKRHTSLVERLSLEETTEIKSLEEKNDTKSDPTEIKAIQSVEDKVPVTLTLDNYSGIH
PMIGMAGISPYDFMNNEN

Nucleotide

• Length: 2457 bp

>NTDB_id=174389 ATY39_RS04010 WP_066786171.1 847973..850429(+) (recD2) [Rummeliibacillus stabekisii strain PP9]
TTGGCTGAAAATCTATCTTTATTTTCCGATGAACCACTTTTTATTGTCGGCCGGCCTGTCGTCACAATATTTCATAATGC
ACAAAACTTATTCTCGATTATTAAATTGAAAATCCAAGAAACAAATACGGATTATAAAGAAAAAGAGATTATTGTCGCAG
GCTATTTTCCTGCTGTCTCAGAAGAAGCGTTATACCGTTATACAGGGCAGCTGAAACAGCATCCTAAATATGGGCTGCAG
TTTCAAGCTGCCACTTTTGAAAAAGAGATTCCAGCAACTGAAACAGGTGTCGTGCAATATTTATCTAGCGATTTATTTCC
GGGGATAGGCCACCGTACAGCTGAAACGATTGTTCAACAGCTAGGTGCAGATGCTATTAAAACCATCATTGAAAATCCTG
ATGTGTTGGATGACGTTCCACGCTTAACAGAAGATAAAAAACAAACACTGCGCTCTGTACTTGAGCAAAATTTAGGGCTT
GACCGCATTATGATTCAATTGAACGAATGGGGATTTGGTGCTCAAATTGCTGTGAAGATTTATCAAATGTATGAAGGTGA
GACACTACAAGTACTACAAAAAAATCCATACCGCCTCATTGAAGATATTGAGGGGATCGGTTTTCAGCGAGCGGATGAAC
TGGGCGCTAGGCTACAAATCACCGGCAACCATCCCGACCGCATCAAAGCCTCTATACTTCACTTGTTAAACACTGCCTCG
TTATCAGAAGGGCATGTTTTTTTAGATGCAAGAGAAATTTTGCCTGCTTCCAAGGCGATGCTTGAATCGAGTCAGTCATG
CACGATTGAATACGATGATATTTCCCAAGCAATAATTGAACTAGGCGAGAATGGCAAAGTTTGCGGTGAAGAAACAAGAG
TTTATTTACCGTCTCTTTACTATTCTGAAATAGGCATTGCTTCAAAGATTACAGAGCTAGCTCAAAAAAACGAAGAGCAC
TCATCTTTTCCTTCTTCTGAGATAAGGAAAGTAATTGGTGAAGCTGAAGAGCGCTTTGGTGTTACATATGCAGATACACA
AGTAAAGGCAATTGAAACGGCTATTAATTCAGCTGTAATGATTTTAACGGGGGGCCCCGGAACGGGGAAAACAACAGTTG
TCAGGGGGATAGTAGATGTCTATGCAGAACTGCATGGACTCTCGCTCAATCCTAAAGATTACGCTGAGAAAGAAGAGGCC
TTTCCAATCGTCCTTGCCGCTCCTACAGGTAGAGCTGCCAAACGCTTAAGCGAATCAACGGAACTGCCTGCAATGACTAT
TCATCGCTTGCTAGGTTTCACGGGTCAAGAAAAAGAAGAAGATGTGGAGCGAGAAGTAATGGGGCGGCTTATTATAGTCG
ATGAAATGTCAATGGTTGATACATGGCTCGCACATCAACTTTTGAGGGCATTGAATGATGACTGCCAAGTAATATTTGTA
GGCGACCAAGACCAACTTCCGCCGGTAGGCCCTGGTCAGGTTTTAAAGGATCTGCTTGCCTCAAAAGCCATTCCAACAGT
GGAGTTAACAGATGTTTATAGGCAATCAGAAGGATCATCAATAATTCAGTTGGCACATGAAATGAAACGTGGTACTGTCC
CTCAAGACTTGATGGTGAAAACAAGCGACCGTTCATTTATACGTGCAACCCAAGATCAAATTGCAGATGTTGTAGGACAA
GTGGTCAAGAGTGCTATTAATAAAGGCTTTTCTATTCATGACGTCCAAGTGCTCGCACCAATGTATCGTGGCAATGCTGG
CATTGATGCAATGAACAAAATGCTACAAGAATTACTAAATCCTAAAAAATCCCAAAAAACAAAAGAGATTGCCTTTGGTG
ATACGATTTACCGGATTGGCGACAAAGTGCTACAACTTGTTAATCAGCCAAATAACAATGTGTTTAATGGCGATATGGGT
GAAGTCATTTCAATTGTGAAGGCAAAAGAAACGATTGAAAAAACGGATTTAATGGTTGTATCGTTTGATGGCATTGAAGT
AACGTATCAAAAAAGTGATCTAAATCAGGTAACGCTTGCGTATTGCTGCTCCATTCACAAATCGCAAGGAAGCGAGTTTC
CGATGGTTATAATGCCAATAGTCCGCGGTTATTCCAAAATGCTTCGGAAAAATTTGCTATATACAGGCATTACAAGAGCT
AAAAATTTTCTTATTCTATGTGGCGAGCCAGACACATTTGTGTATGGATTTCAAAAAACAGATGATATGAAACGCCATAC
CTCACTTGTAGAGCGTTTATCATTGGAAGAGACAACTGAAATCAAATCGCTAGAAGAAAAGAATGATACAAAATCGGACC
CAACTGAGATAAAAGCAATACAATCAGTAGAGGACAAGGTACCTGTTACTTTAACGCTAGATAATTATTCAGGCATTCAT
CCAATGATTGGAATGGCGGGCATTAGCCCTTATGATTTTATGAATAATGAGAATTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (343-551)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-652)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-727)

3D structure

• AlphaFold DB: A0A143HAD3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	53.014	99.389	0.527