Detailed information NTG0174358

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BaDB11_RS21575
• Genome accession: NZ_CP014795
• Coordinates: 4150395..4151174 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain SCK B11
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 4145395..4156174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BaDB11_RS21555 (BaDB11_04339)	trmFO	4146092..4147396 (+)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
BaDB11_RS21560 (BaDB11_04340)	xerC	4147463..4148377 (+)	915	WP_011197974.1	tyrosine recombinase XerC	-
BaDB11_RS21565 (BaDB11_04341)	hslV	4148391..4148936 (+)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
BaDB11_RS21570 (BaDB11_04342)	hslU	4148953..4150356 (+)	1404	WP_003181754.1	HslU--HslV peptidase ATPase subunit	-
BaDB11_RS21575 (BaDB11_04343)	codY	4150395..4151174 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BaDB11_RS21580 (BaDB11_04345)	flgB	4151528..4151917 (+)	390	WP_003181758.1	flagellar basal body rod protein FlgB	-
BaDB11_RS21585 (BaDB11_04346)	flgC	4151917..4152369 (+)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
BaDB11_RS21590 (BaDB11_04347)	fliE	4152383..4152700 (+)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
BaDB11_RS21595 (BaDB11_04348)	fliF	4152751..4154352 (+)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
BaDB11_RS21600 (BaDB11_04349)	fliG	4154366..4155382 (+)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
BaDB11_RS21605 (BaDB11_04350)	fliH	4155366..4156133 (+)	768	WP_009328518.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=174358 BaDB11_RS21575 WP_003181756.1 4150395..4151174(+) (codY) [Bacillus licheniformis strain SCK B11]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=174358 BaDB11_RS21575 WP_003181756.1 4150395..4151174(+) (codY) [Bacillus licheniformis strain SCK B11]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467