Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   BaDB11_RS18450 Genome accession   NZ_CP014795
Coordinates   3551647..3555147 (+) Length   1166 a.a.
NCBI ID   WP_075218351.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCK B11     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3546647..3560147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS18425 (BaDB11_03696) - 3547306..3548673 (-) 1368 WP_017474228.1 sensor histidine kinase -
  BaDB11_RS18430 (BaDB11_03697) - 3548670..3549311 (-) 642 WP_044051832.1 response regulator transcription factor -
  BaDB11_RS18435 (BaDB11_03698) - 3549434..3549874 (-) 441 WP_009328902.1 ferritin-like domain-containing protein -
  BaDB11_RS18440 (BaDB11_03699) modA 3550078..3550872 (+) 795 WP_003180424.1 molybdate ABC transporter substrate-binding protein -
  BaDB11_RS18445 (BaDB11_03700) modB 3550881..3551537 (+) 657 WP_003180426.1 molybdate ABC transporter permease subunit -
  BaDB11_RS18450 (BaDB11_03701) addB 3551647..3555147 (+) 3501 WP_075218351.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  BaDB11_RS18455 (BaDB11_03702) addA 3555134..3558826 (+) 3693 WP_080618607.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  BaDB11_RS18460 (BaDB11_03703) sbcD 3558891..3560072 (+) 1182 WP_073426309.1 exonuclease subunit SbcD -

Sequence

Protein


Download         Length: 1166 a.a.        Molecular weight: 134436.55 Da        Isoelectric Point: 5.5700

>NTDB_id=174343 BaDB11_RS18450 WP_075218351.1 3551647..3555147(+) (addB) [Bacillus licheniformis strain SCK B11]
MGAVFLSGRSGSGKTTFILNEIREKLRDEPLGKPIIFLVPDQMTFLMEYELSKTPDLGGTIRAQVYSFSRLAWRVLQHTG
GMNRPFLTGTGIQMLLRRLIEEHKGEFKVYQNASDKSGFTEQVERMLTEFKRHCLPPQSIRDMMEGTGKSEYEDERILSD
KLHDLYILYSKLEENLENQYVQSEDYLTLLAEQIPYAEEIRNAAVYVDGFHQFTPQEMSVLEQLMVHAEEITFSLTADKP
FTANSPNDLHLFRMTGKAYYDLYQKAKELGLDPSEVRLEETKRHRHHPELQHLERYFDERPAKPYPGQTESLRIMQASNR
RTEIEGIAREIHSLIRQGRFRLRDIAVIARNVEDYKDTIKEVFKDCELPFFIDGKESMQNHPLIELIRSTLDIIKGNWRY
EAVFRCVKTELLFPEGQPKERLREQIDQLENYCIAYGIKGDRWTSKDPFVYRRYASLDEDFAKTDKEIETENMLNELKGW
IVPPIHRLQKRLKKAETVREMAEVVYLYLEEADVPMKLEQERRLAEEGGRIAESRQHEQVWDAVIQLLDEFVEMMGTERI
SFALFQQMIETGLESLKFALIPPALDQVFIGNMDLSRMYGTKCTFLIGVNDGILPARPADDGVLSDEDREWLKRNGAQLA
ATGREQLLDENFLIYMTLSSPSEKLYVSYPIADSEGKTLLPSTVVKRLNELFPDSEEKMLIHEPEQLDDEAQLEFLVNKG
IALSHLAGQLGIWTRQYAISDVWWSTYNFLMNEPDRIFSQNILSSLFFRNKVENLNRHVSRDLYGEHIQGSVSRMETFKA
CPFSHFASHGLKLKERQFFKLEAPDIGQLFHSALKLISDRLHELKLDWRDLTKAQCETLSSDAVERLAPKLQKEILLSSN
RHHYVKQKLQKIIARVSGILSEHAKASGFAPVGIELGFGGKGPLPPMRFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV
DYKSSDKGLDLAEVYYGLALQMLTYLDLSITHSTDWLGMKASPAGVLYFHVHDPMIQASVPLGLDEIEKEIFKKFKMKGL
LLGDQEAVKLMDTTLEQGRSNIISAGLKKDGSLRSDSDVVAEEDFHVLRRHIRRTFQQAGEEITDGKVSIEPYKLKDRTP
CTYCSYRSFCQFDESLEENEYRILKPEKDSVILERLKKEDEADGDF

Nucleotide


Download         Length: 3501 bp        

>NTDB_id=174343 BaDB11_RS18450 WP_075218351.1 3551647..3555147(+) (addB) [Bacillus licheniformis strain SCK B11]
GTGGGAGCAGTATTTTTATCAGGCAGATCCGGGAGTGGGAAAACGACCTTTATCCTGAATGAAATCAGAGAAAAACTTCG
CGATGAACCGCTCGGAAAACCGATCATTTTTCTAGTCCCGGATCAAATGACGTTTTTAATGGAATACGAGCTTAGCAAAA
CACCCGATTTGGGCGGAACCATCCGCGCCCAAGTGTACAGTTTTTCACGGCTTGCCTGGCGAGTGCTCCAACACACCGGA
GGCATGAACCGGCCGTTCTTGACGGGAACGGGCATTCAGATGCTGCTGCGGAGACTGATTGAAGAGCATAAGGGCGAGTT
TAAAGTCTATCAAAACGCAAGCGATAAAAGCGGATTTACGGAGCAGGTGGAACGGATGCTGACCGAATTTAAACGGCACT
GTCTGCCGCCTCAAAGCATCCGGGATATGATGGAAGGGACAGGCAAGTCGGAATACGAAGATGAACGGATTCTTTCCGAT
AAATTGCACGACTTATATATTTTGTACAGCAAGCTTGAGGAAAATCTGGAGAATCAATATGTTCAATCTGAAGATTATTT
GACCCTTTTAGCCGAACAGATTCCGTATGCGGAAGAGATTAGAAACGCTGCCGTTTACGTTGACGGATTTCACCAATTCA
CGCCTCAGGAGATGAGCGTACTAGAACAGCTGATGGTACATGCCGAAGAGATCACGTTTTCGCTGACGGCGGATAAGCCG
TTTACGGCAAACAGCCCGAATGATCTCCATCTGTTCAGGATGACCGGGAAGGCGTACTATGACCTTTACCAAAAGGCGAA
GGAACTCGGCCTTGATCCGTCTGAAGTGCGGCTGGAAGAAACGAAACGGCACCGGCATCATCCGGAGCTTCAGCATCTTG
AACGCTATTTTGATGAACGTCCTGCAAAACCGTATCCCGGACAGACGGAATCGCTCCGCATCATGCAGGCGTCGAACAGA
AGAACCGAGATTGAAGGAATTGCGCGCGAGATTCATTCTTTAATCCGCCAGGGCCGGTTCCGGCTTAGGGATATTGCTGT
CATCGCCCGCAATGTTGAAGATTATAAAGATACGATAAAAGAAGTTTTTAAAGACTGCGAACTTCCTTTTTTCATAGACG
GCAAGGAATCGATGCAAAATCATCCGCTTATTGAGCTGATCCGTTCGACGCTTGATATCATTAAAGGAAATTGGCGGTAT
GAAGCCGTGTTCCGCTGTGTCAAAACGGAGCTTTTATTCCCGGAAGGACAGCCGAAGGAACGGCTGCGCGAACAGATTGA
CCAGCTTGAAAACTACTGTATTGCTTATGGCATTAAAGGAGACAGATGGACAAGCAAAGATCCGTTTGTTTACAGAAGAT
ACGCTTCACTGGATGAGGATTTTGCCAAGACAGACAAAGAGATTGAAACGGAAAATATGCTCAATGAACTAAAGGGCTGG
ATCGTTCCGCCGATTCACAGGCTGCAGAAGCGCTTGAAAAAAGCTGAAACAGTAAGGGAAATGGCCGAAGTCGTCTACCT
TTATCTTGAAGAAGCCGATGTTCCGATGAAGCTTGAACAGGAAAGGCGGCTAGCCGAAGAAGGCGGAAGGATTGCCGAGT
CGCGCCAGCATGAGCAAGTATGGGATGCCGTTATTCAACTGTTGGACGAGTTTGTTGAAATGATGGGCACAGAGCGGATT
TCGTTTGCGTTATTTCAGCAAATGATCGAAACCGGATTGGAGTCTTTGAAATTCGCGCTGATTCCGCCCGCACTTGATCA
AGTGTTTATCGGCAATATGGACCTTTCAAGGATGTACGGCACGAAATGTACATTTCTCATCGGTGTAAACGACGGCATAC
TTCCGGCGAGGCCTGCGGATGACGGCGTGCTTTCAGACGAGGACAGGGAGTGGCTGAAACGAAACGGCGCACAGCTGGCG
GCAACAGGGCGAGAGCAGCTATTGGACGAGAATTTTCTGATCTATATGACGCTTTCAAGCCCGTCTGAAAAGCTTTATGT
CTCCTATCCGATCGCTGATTCGGAAGGGAAGACGCTGCTTCCTTCAACAGTGGTGAAACGGCTGAATGAACTGTTCCCGG
ACAGCGAAGAAAAGATGCTGATTCATGAACCCGAGCAGCTGGACGATGAAGCCCAGCTTGAATTTCTCGTGAATAAAGGC
ATCGCCTTGAGCCATTTGGCAGGGCAGCTCGGCATCTGGACGAGGCAGTATGCGATCAGCGATGTATGGTGGAGTACATA
CAACTTTTTAATGAATGAGCCTGACCGCATCTTTTCTCAAAACATCCTGTCCAGCCTGTTTTTCAGAAACAAGGTCGAAA
ACCTAAACCGGCATGTGAGCCGCGATTTATACGGGGAGCACATTCAGGGAAGCGTGTCGCGGATGGAGACGTTCAAGGCC
TGTCCGTTTTCCCATTTTGCTTCGCACGGCTTAAAGCTGAAGGAACGCCAATTTTTCAAGCTTGAAGCTCCGGATATCGG
TCAGCTGTTCCACTCTGCGCTGAAGCTGATTTCAGACCGGCTTCACGAGCTTAAACTGGATTGGCGCGACTTAACGAAAG
CCCAGTGCGAGACTTTGTCAAGCGATGCAGTTGAACGGCTTGCGCCTAAACTGCAAAAGGAGATTCTGCTCAGTTCGAAC
CGTCATCATTATGTGAAGCAGAAGCTGCAAAAAATCATTGCCAGGGTATCGGGCATTTTAAGTGAGCATGCAAAAGCAAG
CGGCTTTGCCCCCGTCGGCATAGAGCTCGGATTCGGAGGGAAAGGTCCGCTTCCTCCAATGCGTTTCACCTTGAAGAACG
GCTGCACGATGGAGCTTGTCGGCCGGATCGACAGAGTGGATAAAGCGGAGAGCTCAAAAGGGCTGCTGCTTAGGATTGTT
GATTATAAATCAAGCGATAAAGGCCTCGATTTGGCCGAGGTGTATTACGGGCTTGCCCTGCAAATGCTGACATATCTCGA
TTTGTCGATCACGCATTCAACCGATTGGCTCGGCATGAAAGCATCCCCGGCAGGCGTGCTCTATTTTCATGTGCACGATC
CAATGATCCAGGCTTCAGTGCCGCTCGGCCTTGATGAAATAGAAAAAGAGATTTTCAAAAAGTTCAAGATGAAAGGGCTG
CTCCTGGGAGACCAGGAAGCGGTCAAGCTGATGGACACCACCCTGGAACAAGGCAGGTCGAATATTATCAGCGCCGGTTT
GAAAAAAGACGGCTCGCTCCGTTCGGATTCTGACGTTGTTGCAGAAGAGGATTTTCATGTATTGAGGCGTCATATCCGCC
GGACATTTCAGCAGGCCGGCGAGGAGATCACAGACGGCAAAGTGTCGATCGAGCCTTACAAGCTAAAAGACCGGACACCG
TGCACATATTGTTCATACCGGTCATTCTGCCAGTTTGACGAATCGCTTGAGGAAAACGAATACCGAATATTAAAACCTGA
AAAAGACAGCGTGATATTGGAGCGGCTGAAAAAGGAGGATGAGGCAGATGGAGATTTCTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(790-1131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

73.991

99.914

0.739

Multiple sequence alignment