Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   B34_RS00830 Genome accession   NZ_CP014793
Coordinates   165631..166533 (+) Length   300 a.a.
NCBI ID   WP_080623899.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 34     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 160631..171533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS00810 (B34_00165) - 161293..162981 (+) 1689 WP_017474806.1 hypothetical protein -
  B34_RS00815 (B34_00166) - 162978..163259 (+) 282 WP_003181737.1 FlhB-like flagellar biosynthesis protein -
  B34_RS00820 (B34_00167) sucC 163436..164596 (+) 1161 WP_003181739.1 ADP-forming succinate--CoA ligase subunit beta -
  B34_RS00825 (B34_00168) sucD 164615..165517 (+) 903 WP_003181741.1 succinate--CoA ligase subunit alpha -
  B34_RS00830 (B34_00169) dprA 165631..166533 (+) 903 WP_080623899.1 DNA-processing protein DprA Machinery gene
  B34_RS00835 (B34_00170) topA 166738..168813 (+) 2076 WP_003181746.1 type I DNA topoisomerase -
  B34_RS00840 (B34_00171) trmFO 168889..170193 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B34_RS00845 (B34_00172) xerC 170260..171174 (+) 915 WP_003181750.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33180.56 Da        Isoelectric Point: 10.3365

>NTDB_id=174145 B34_RS00830 WP_080623899.1 165631..166533(+) (dprA) [Bacillus licheniformis strain SCDB 34]
MNVSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
TAISSPDYPASLKTIHDPPPVLFLKGNKKLLHEQRLIGIVGTRCPSLYGKRAAVQLVRELCKNSWTIVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAESHLLVSEHPPHIKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLTIEDILNELPPSNAQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=174145 B34_RS00830 WP_080623899.1 165631..166533(+) (dprA) [Bacillus licheniformis strain SCDB 34]
ATGAACGTCAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAGGCGGCCGGCGTCCGCATG
ACCGCCATATCTTCCCCTGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CAAAAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACTCGCTGCCCGTCATTATACGGAAAAAGAGCTGCGG
TCCAGCTTGTCAGGGAGCTTTGCAAAAACAGCTGGACGATCGTCAGCGGTCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCCGTTCAAAGGGAAGGACAATCGGCGTTATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACATCG
CCAGCTCGCCGGACAAATGGCCGAAAGCCACCTGCTGGTATCAGAGCACCCTCCTCACATTAAACCGCAAAAATGGCATT
TTCCCATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAAGGCAAGGAAAAGAGCGGATCGCTC
ATTACAGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGATGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTAACTATTGAAGACATTTTGAACGAACTTCCGCCTTCAAACG
CTCAATATACAGAGCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573

Multiple sequence alignment