Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BSR30_RS05995 Genome accession   NZ_CP018205
Coordinates   1178503..1179276 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain HG001 isolate RN1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1173503..1184276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR30_RS05975 trmFO 1173847..1175154 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  BSR30_RS05980 xerC 1175571..1176467 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  BSR30_RS05985 hslV 1176464..1177009 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  BSR30_RS05990 hslU 1177075..1178478 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  BSR30_RS05995 codY 1178503..1179276 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BSR30_RS06000 - 1179327..1179419 (+) 93 WP_001790530.1 hypothetical protein -
  BSR30_RS06005 rpsB 1179618..1180385 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  BSR30_RS06010 - 1180419..1180532 (+) 114 WP_001789890.1 hypothetical protein -
  BSR30_RS06015 tsf 1180567..1181448 (+) 882 WP_000201387.1 translation elongation factor Ts -
  BSR30_RS06020 pyrH 1181585..1182307 (+) 723 WP_000057330.1 UMP kinase -
  BSR30_RS06025 frr 1182326..1182880 (+) 555 WP_001280006.1 ribosome recycling factor -
  BSR30_RS06030 - 1183253..1184023 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=173986 BSR30_RS05995 WP_000055337.1 1178503..1179276(+) (codY) [Staphylococcus aureus strain HG001 isolate RN1]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=173986 BSR30_RS05995 WP_000055337.1 1178503..1179276(+) (codY) [Staphylococcus aureus strain HG001 isolate RN1]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment