Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   A1R12_RS07975 Genome accession   NZ_CP014783
Coordinates   1611879..1612658 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain B15     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606879..1617658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS07955 (A1R12_07955) trmFO 1607566..1608873 (+) 1308 WP_061890598.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  A1R12_RS07960 (A1R12_07960) xerC 1608943..1609860 (+) 918 WP_039251511.1 tyrosine recombinase XerC -
  A1R12_RS07965 (A1R12_07965) hslV 1609876..1610421 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  A1R12_RS07970 (A1R12_07970) hslU 1610438..1611841 (+) 1404 WP_061890599.1 HslU--HslV peptidase ATPase subunit -
  A1R12_RS07975 (A1R12_07975) codY 1611879..1612658 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  A1R12_RS07980 (A1R12_07980) flgB 1613012..1613401 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  A1R12_RS07985 (A1R12_07985) flgC 1613401..1613853 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  A1R12_RS07990 (A1R12_07990) fliE 1613864..1614184 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  A1R12_RS07995 (A1R12_07995) fliF 1614227..1615837 (+) 1611 WP_061890600.1 flagellar basal-body MS-ring/collar protein FliF -
  A1R12_RS08000 (A1R12_08000) fliG 1615850..1616866 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  A1R12_RS08005 (A1R12_08005) fliH 1616859..1617614 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=173968 A1R12_RS07975 WP_003154263.1 1611879..1612658(+) (codY) [Bacillus amyloliquefaciens strain B15]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=173968 A1R12_RS07975 WP_003154263.1 1611879..1612658(+) (codY) [Bacillus amyloliquefaciens strain B15]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment