Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BSO20_RS07785 Genome accession   NZ_CP018200
Coordinates   1659227..1661044 (-) Length   605 a.a.
NCBI ID   WP_032872366.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654227..1666044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS07755 (BSO20_07760) - 1655066..1655668 (-) 603 WP_032872373.1 NAD(P)H-dependent oxidoreductase -
  BSO20_RS07760 (BSO20_07765) - 1655883..1656434 (+) 552 WP_012117104.1 PadR family transcriptional regulator -
  BSO20_RS07765 (BSO20_07770) cyoE 1656472..1657419 (-) 948 WP_032872371.1 heme o synthase -
  BSO20_RS19965 - 1657557..1657637 (-) 81 Protein_1529 hypothetical protein -
  BSO20_RS07775 (BSO20_07780) - 1657782..1658639 (-) 858 WP_032872368.1 VOC family protein -
  BSO20_RS07780 (BSO20_07785) - 1658656..1659060 (-) 405 WP_007408534.1 DoxX family protein -
  BSO20_RS07785 (BSO20_07790) rcrQ 1659227..1661044 (-) 1818 WP_032872366.1 ABC transporter ATP-binding protein Regulator
  BSO20_RS07790 (BSO20_07795) - 1661025..1662758 (-) 1734 WP_032872363.1 ABC transporter ATP-binding protein -
  BSO20_RS20200 (BSO20_07800) - 1663043..1665369 (-) 2327 Protein_1534 peptidase G2 autoproteolytic cleavage domain-containing protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67568.28 Da        Isoelectric Point: 9.6375

>NTDB_id=173869 BSO20_RS07785 WP_032872366.1 1659227..1661044(-) (rcrQ) [Bacillus amyloliquefaciens strain WS-8]
MQKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
QTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFIGTISVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHALYQPIKTGEIEFRDVSFGYQEDSPILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLRQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=173869 BSO20_RS07785 WP_032872366.1 1659227..1661044(-) (rcrQ) [Bacillus amyloliquefaciens strain WS-8]
ATGCAAAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTTATCGTCGGA
CAGACGACAGACGGATTGGCGGGGGTGCTGTTCATCCTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTTACCCATCTCCATGAGCTGC
CGATTCCGTTTTTTGATAAACAGCGGCTCGGGGACTTAATGAGCCGGGTCACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCATCGGCACAATCTCCGTCATGCTGTACATGAGTCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGACTGC
TGTTTAAACAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGGGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAACAATTTTTAGAAAAAAACGCGGCGTTACAATCATCGGGGTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGATGGATCTCAATCGGATCTATCGTCGTATTCGCCGAATACTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTAGCCAATCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAGCGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGCTGTACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCCGATCTTAAAACACCTGTCCTTCAGCGTTCCGAAAGGACAATCAATCGCCTTCGTCGGACCG
ACCGGAGCGGGTAAAACAACCGTTACGAGCCTGATCGCCCGTTTTTACGAGCCGAATAACGGAAAAATCCTCATTGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTTTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACCATCAGGGAAAATATCCGTTACGGCCGTCTGGACGCATCTGATCAAGAGGTGGAGGCAGCCGCAAAAGCCGCCAAT
GCCCACGGATTCATCGAACGGCTCCCGAAAGGCTACGATACCGTCCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTTATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACGATTCAAAAAGCCGATCAGATTCTTGTGCTGAAGGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGGCAGAACGGGTTTTACCGGGAATTATATGAAAGCCAGTTCCGGGAATCATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(382-531)

ABC transporter transmembrane region (ABC_membrane)

(49-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.765

96.364

0.374

Multiple sequence alignment