Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BSR20_RS02940 Genome accession   NZ_CP018189
Coordinates   586295..588163 (+) Length   622 a.a.
NCBI ID   WP_013990253.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 581295..593163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS02930 (BSR20_02935) gshAB 581507..583771 (-) 2265 WP_045768806.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  BSR20_RS02935 (BSR20_02940) - 584560..586305 (+) 1746 WP_013990252.1 ABC transporter ATP-binding protein -
  BSR20_RS02940 (BSR20_02945) rcrQ 586295..588163 (+) 1869 WP_013990253.1 ABC transporter ATP-binding protein Regulator
  BSR20_RS02945 (BSR20_02950) - 588258..589781 (-) 1524 WP_156209507.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68747.11 Da        Isoelectric Point: 4.9866

>NTDB_id=173729 BSR20_RS02940 WP_013990253.1 586295..588163(+) (rcrQ) [Streptococcus salivarius strain ICDC3]
MQNKKKANWGSLARLLRFLWQDYKLSLSIAFVLIVVASLATVNLTASIQSLVDVYVQPMLKSGSHDFGPLLHFLTSVAVF
CLIGVIANYVSSLLMATISQDSLRSLRNQLFARMQKLPVRYFDTHQHGDIMSIYTNDIDALRQAVEQSIPQLLQTAITLI
GVTVTMLTVSPLLFIVVLVMVGIMFMVIKNVSAKSGRYFGEQQKNLGIENGFIEEMMSGQKVVKAFVHEEESMADFDKIN
EQLFESSYLANRYANVLMPILGNLGNVSFVLTALVGGLFALNGVGGLTIGGLMAFLQLNRSFNGPITQVSQQLNFVLMAL
AGADRIFDLLDEPEEVDQGKVTLVNYELVDGQMVVTDKKTNLWAWKHPRPNGDYELVELVGNVVFQDVDFSYDGKKQILH
DVNLYADKGQKVAFVGATGAGKTTITNLINRFYDIQSGVITYDGIDVKLIEKDSLRRSLGIVLQDTHLFTGTIAENIAYG
RADATREEILEAARIANVDSFVQHLDNGYDTVLTDDGAGLSNGQRQLIAIARAALANAPVLILDEATSSIDSRTEKMVQE
GMDRLMEGRTVFVIAHRLSTIVNSDVIMVMDHGRIIERGDHDSLMEQGGTYYRLYTGGLEID

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=173729 BSR20_RS02940 WP_013990253.1 586295..588163(+) (rcrQ) [Streptococcus salivarius strain ICDC3]
ATGCAGAATAAGAAAAAAGCTAATTGGGGCTCTCTAGCACGTCTTCTACGCTTTTTGTGGCAAGACTACAAACTTTCGCT
TTCTATCGCCTTTGTCCTTATTGTGGTTGCTTCCTTGGCAACGGTCAATTTGACGGCTTCTATTCAGTCCTTGGTTGACG
TTTATGTTCAACCCATGCTCAAATCTGGTAGCCATGACTTTGGTCCGCTTTTACATTTCTTGACTTCAGTGGCTGTCTTC
TGTCTTATCGGTGTGATTGCCAACTATGTGTCATCACTCCTCATGGCGACGATTTCGCAAGATTCTCTGCGTTCCCTTCG
TAATCAGCTCTTTGCTCGCATGCAAAAGCTCCCTGTTCGCTACTTTGACACTCACCAACACGGTGACATCATGTCTATCT
ACACCAACGACATCGATGCCCTCCGTCAGGCTGTTGAGCAGTCTATTCCACAGTTGTTACAAACAGCTATTACCCTTATC
GGGGTGACTGTAACCATGCTTACGGTTAGTCCTCTCCTCTTTATCGTGGTCCTAGTCATGGTAGGCATCATGTTTATGGT
CATCAAAAATGTATCAGCTAAATCAGGCCGTTACTTCGGTGAACAACAAAAGAATTTAGGGATTGAGAATGGTTTCATCG
AGGAAATGATGTCAGGGCAAAAAGTGGTCAAGGCCTTTGTCCACGAAGAAGAGAGCATGGCTGATTTTGACAAGATTAAC
GAGCAACTCTTTGAATCTTCTTACTTGGCCAACCGCTATGCCAATGTTCTCATGCCAATTCTTGGAAACTTAGGAAATGT
TTCCTTTGTTTTGACCGCCTTGGTTGGTGGACTCTTTGCCCTTAATGGTGTTGGTGGTTTGACTATCGGTGGTCTCATGG
CCTTTCTCCAATTGAACCGTTCTTTCAACGGTCCTATTACTCAGGTCTCTCAACAACTGAACTTTGTTCTTATGGCACTT
GCTGGTGCTGACCGTATCTTTGACCTCTTGGATGAGCCAGAAGAAGTTGACCAAGGTAAGGTCACTTTGGTTAACTACGA
ATTGGTAGATGGTCAAATGGTTGTGACAGACAAGAAAACCAATCTTTGGGCTTGGAAACACCCACGTCCAAATGGTGACT
ACGAATTGGTCGAGTTGGTCGGAAATGTGGTCTTTCAAGACGTTGATTTCTCTTACGATGGTAAGAAACAAATCCTTCAT
GACGTTAATCTCTATGCAGACAAGGGGCAAAAGGTAGCCTTTGTGGGTGCGACAGGTGCTGGTAAGACGACGATTACCAA
CTTGATTAACCGTTTCTACGATATCCAATCTGGTGTGATTACTTATGATGGTATTGATGTCAAGCTGATTGAGAAAGATT
CTCTTCGTCGCTCGCTTGGTATCGTGCTTCAAGATACCCATCTCTTCACAGGGACTATCGCTGAAAATATTGCCTATGGT
CGTGCCGATGCGACGCGAGAGGAAATTCTTGAAGCTGCCCGTATTGCTAATGTGGATTCCTTTGTGCAACACTTGGATAA
TGGGTATGACACTGTTCTGACAGATGACGGTGCAGGCTTGTCCAATGGGCAACGTCAGCTTATTGCCATTGCGCGTGCTG
CCCTTGCCAATGCACCGGTTCTTATCCTTGACGAGGCGACATCCTCTATTGACTCTCGTACCGAAAAAATGGTGCAAGAG
GGGATGGACCGACTTATGGAAGGACGTACGGTCTTCGTTATTGCCCACCGTCTTTCAACCATCGTCAATTCTGACGTCAT
CATGGTTATGGATCACGGACGTATCATTGAACGTGGTGACCACGACAGCCTTATGGAACAAGGTGGTACCTACTACCGAC
TCTATACTGGTGGTCTGGAAATTGATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(29-305)

ABC transporter (ABC_tran)

(399-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.073

98.875

0.367

Multiple sequence alignment