Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   A0V43_RS10765 Genome accession   NZ_CP014749
Coordinates   2196326..2198692 (-) Length   788 a.a.
NCBI ID   WP_063193854.1    Uniprot ID   A0A142D6E7
Organism   Geobacillus sp. JS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2191326..2203692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0V43_RS10745 (A0V43_10745) ahpC 2191831..2192394 (-) 564 WP_013144645.1 alkyl hydroperoxide reductase subunit C -
  A0V43_RS19805 - 2192737..2192910 (-) 174 WP_013144644.1 hypothetical protein -
  A0V43_RS10750 (A0V43_10750) dtd 2192994..2193452 (-) 459 WP_063193071.1 D-aminoacyl-tRNA deacylase -
  A0V43_RS10755 (A0V43_10755) - 2193476..2195674 (-) 2199 WP_013144642.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  A0V43_RS10760 (A0V43_10760) - 2195823..2196335 (-) 513 WP_013144641.1 adenine phosphoribosyltransferase -
  A0V43_RS10765 (A0V43_10765) recJ 2196326..2198692 (-) 2367 WP_063193854.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  A0V43_RS10770 (A0V43_10770) - 2198750..2199658 (-) 909 WP_128578017.1 cation diffusion facilitator family transporter -
  A0V43_RS10775 (A0V43_10775) secDF 2199796..2202048 (-) 2253 WP_063193072.1 protein translocase subunit SecDF -
  A0V43_RS10780 (A0V43_10780) - 2202162..2202449 (-) 288 WP_013144637.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 86781.22 Da        Isoelectric Point: 6.0643

>NTDB_id=173594 A0V43_RS10765 WP_063193854.1 2196326..2198692(-) (recJ) [Geobacillus sp. JS12]
MLKAKTRWEVERLDEQTVRRLAEEAGVTPLLARLLVRRGVRTASEAAAFLNPLRQPFHDPFLLDGMERAIQRLKRAIDAG
ERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEW
GMDVIVTDHHEPGPVLPEAHAIIHPKQPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLF
VAHGLEALRATERIGLRALFRQCRINAAAINEQTVGFVIAPRLNAAGRLGGADPAVALLMTDDENEAVQLAAEMDELNRE
RQQLVAQIAEEAADMVRRQFPPEEHRVLVVAGEGWNAGVVGIVASKLVEQFYRPAVVLSIDQEKGIAKGSARSIHGFDLF
ASLSQCRDLLPHFGGHPMAAGMTLALDDVEELRQRLNAIAAETLSEDDFTPPTFIDASCSIAELTLDAARGLERFAPFGV
GNPRPLVLIEGASVETMRRVGANGAHMKAVFSQDGAAIDAIGFGLGPLCEEIAPDARISAVGELSVNEWNGFAKPQLSLC
DLAVSDCQLFDVRGCRDVRPLLERLPKEKRLVVSFRCKTGQRPDVAPFRGELHCVPTEEEAGALSIDDRYVVLLDVPPRL
ALLSALLGSGRPARIYAVFAQPEAQFFRTFPTREHFKWFYAFLHQHRSFPLAKRGGELARARGWTEETVHFMAKVFLELD
FISEQNGVISLVHQPAKRDLHESPTYRRRRDELEAEHQLVYSTYEQLKRCLAEMTRSQTHEEANVSWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=173594 A0V43_RS10765 WP_063193854.1 2196326..2198692(-) (recJ) [Geobacillus sp. JS12]
ATGTTGAAAGCGAAAACGCGTTGGGAGGTGGAGCGCCTCGATGAGCAGACGGTGAGGCGGCTGGCTGAGGAAGCCGGCGT
CACGCCCTTATTGGCGAGGCTTCTCGTCCGCCGCGGGGTGCGGACGGCCTCGGAGGCGGCGGCGTTTCTCAATCCGCTTC
GCCAACCGTTTCATGATCCGTTTTTGCTTGACGGGATGGAGCGAGCGATTCAGCGTCTAAAGCGGGCGATCGACGCGGGT
GAACGCGTGTTGGTATACGGCGATTACGATGCCGATGGCGTTTGCAGCACGTCGGTGATGGTGAGTGCTCTCAAGGAGGC
GGGGGCGTCGGTCGAGTTCTACATTCCGAACCGATTTACGGAAGGATACGGGCCGAACATGGCGGCGTTTCGCTCCGCAA
AAGAGCGCGGCGTTTCCGTCATTGTGACCGTCGACAATGGGATTGCGGCGGTCAAGGAAATTGCGGCCGCCAACGAGTGG
GGGATGGATGTCATCGTAACGGATCACCACGAGCCAGGTCCGGTGTTGCCGGAGGCGCATGCGATCATTCATCCGAAGCA
GCCGGGAAGTACATATCCGTTTCGCGATTTAGCCGGCGTCGGCGTTGCGTTTAAGGTAGCCCATGCCTTGCTTGGGCGGG
TGCCGCGCCATTTGCTTGATTTGGTCGCGATCGGCACGATCGCTGATTTGGTTCCGCTTGTTGGGGAAAACCGCCTCTTT
GTTGCACACGGGCTTGAAGCGTTGCGAGCGACGGAGCGCATCGGGCTGCGCGCTCTTTTTCGGCAATGCCGCATTAATGC
GGCGGCCATCAACGAACAGACGGTCGGATTTGTCATCGCTCCGCGCTTGAACGCGGCGGGGCGCCTCGGCGGCGCCGATC
CGGCAGTGGCGCTCTTAATGACGGACGATGAGAACGAAGCGGTGCAGCTGGCGGCGGAGATGGATGAGTTAAACCGCGAA
CGTCAGCAGCTTGTGGCACAAATCGCTGAAGAAGCGGCGGACATGGTGCGCCGCCAATTTCCTCCTGAGGAACATCGCGT
CTTGGTTGTGGCAGGCGAAGGATGGAATGCCGGAGTGGTGGGCATTGTCGCTTCTAAGCTTGTCGAGCAGTTTTACCGCC
CGGCGGTCGTGCTTTCCATCGACCAGGAAAAAGGGATCGCCAAAGGGTCAGCCCGCAGCATTCATGGGTTTGACTTATTC
GCCAGCCTGTCGCAATGCCGCGACCTGTTGCCGCACTTTGGCGGCCACCCGATGGCGGCGGGGATGACATTGGCGCTTGA
TGATGTCGAAGAATTGCGGCAACGGCTGAACGCCATCGCCGCCGAAACGTTGTCTGAGGACGATTTTACGCCGCCGACGT
TCATCGATGCTTCCTGTTCGATTGCTGAGTTGACGCTCGACGCCGCCCGCGGTCTTGAGCGGTTCGCTCCGTTTGGCGTC
GGCAATCCGCGGCCGCTTGTTCTCATTGAAGGGGCGTCCGTTGAAACGATGCGGCGCGTCGGGGCGAACGGAGCCCATAT
GAAAGCCGTCTTTTCCCAAGACGGGGCCGCGATCGATGCCATCGGCTTCGGCCTCGGGCCGTTATGCGAAGAAATCGCTC
CGGATGCGCGCATTTCGGCGGTCGGGGAGCTGTCGGTGAACGAATGGAACGGGTTCGCCAAGCCGCAGCTGTCGTTGTGT
GATCTGGCGGTCAGCGACTGCCAGCTGTTTGACGTCCGCGGCTGCCGCGACGTCCGTCCACTTCTTGAGCGGCTGCCAAA
AGAGAAGCGGCTAGTCGTCTCCTTTCGCTGCAAAACTGGACAGCGCCCGGACGTGGCTCCATTTCGCGGGGAGCTTCATT
GCGTGCCGACCGAAGAAGAGGCGGGCGCCTTATCGATTGACGACCGCTATGTCGTGCTGCTTGACGTGCCGCCGCGGCTG
GCCTTGCTGTCGGCGCTTCTTGGCAGCGGGCGGCCGGCGCGCATTTACGCGGTGTTCGCCCAGCCCGAGGCGCAATTTTT
CCGCACGTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCCTTTTTGCATCAACACCGTTCGTTTCCGCTCGCCAAGC
GCGGCGGTGAGCTGGCCCGCGCCCGCGGTTGGACGGAAGAGACGGTTCATTTTATGGCGAAGGTGTTTTTAGAGCTTGAC
TTTATCAGCGAACAAAACGGCGTCATTTCGCTCGTTCATCAGCCGGCGAAGCGCGATTTGCACGAATCGCCGACGTACCG
CCGGCGGCGGGACGAGCTCGAGGCGGAGCATCAGTTAGTCTATTCCACTTACGAGCAATTGAAACGCTGTTTGGCGGAAA
TGACACGTTCGCAAACGCACGAGGAGGCAAACGTATCATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(455-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142D6E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.76

98.858

0.522

Multiple sequence alignment