Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   BSR14_RS09535 Genome accession   NZ_CP018186
Coordinates   2053097..2053327 (-) Length   76 a.a.
NCBI ID   WP_013991265.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2048097..2058327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR14_RS09500 (BSR14_09605) - 2048487..2048933 (-) 447 WP_045001368.1 hypothetical protein -
  BSR14_RS09505 (BSR14_09610) - 2049011..2049667 (-) 657 WP_014632546.1 CPBP family intramembrane glutamic endopeptidase -
  BSR14_RS09510 (BSR14_09615) - 2049679..2049876 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  BSR14_RS09515 (BSR14_09620) - 2050127..2051320 (-) 1194 WP_002885831.1 acetate kinase -
  BSR14_RS09520 (BSR14_09625) comGH 2051377..2052333 (-) 957 WP_014632544.1 class I SAM-dependent methyltransferase Machinery gene
  BSR14_RS09525 (BSR14_09630) comGG 2052378..2052695 (-) 318 WP_045001363.1 competence type IV pilus minor pilin ComGG Machinery gene
  BSR14_RS09530 (BSR14_09635) comGF 2052673..2053110 (-) 438 WP_014632542.1 competence type IV pilus minor pilin ComGF Machinery gene
  BSR14_RS09535 (BSR14_09640) comGE 2053097..2053327 (-) 231 WP_013991265.1 competence type IV pilus minor pilin ComGE Machinery gene
  BSR14_RS09540 (BSR14_09645) comGD 2053359..2053787 (-) 429 WP_269434102.1 competence type IV pilus minor pilin ComGD Machinery gene
  BSR14_RS09545 (BSR14_09650) comGC 2053747..2054061 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  BSR14_RS09550 (BSR14_09655) comGB 2054070..2055170 (-) 1101 WP_156209968.1 competence type IV pilus assembly protein ComGB Machinery gene
  BSR14_RS09555 (BSR14_09660) comGA 2055052..2055993 (-) 942 WP_045771803.1 competence type IV pilus ATPase ComGA Machinery gene
  BSR14_RS09560 (BSR14_09665) - 2056073..2056435 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8399.82 Da        Isoelectric Point: 10.4655

>NTDB_id=173565 BSR14_RS09535 WP_013991265.1 2053097..2053327(-) (comGE) [Streptococcus salivarius strain ICDC1]
MAVLVLVSGLILDQINTNRRLMARNLHQQEVLSVATMAVQTKQDQLTLNGITVTVKRSKQGIAVYESGKEIIHVSQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=173565 BSR14_RS09535 WP_013991265.1 2053097..2053327(-) (comGE) [Streptococcus salivarius strain ICDC1]
ATGGCTGTCTTAGTACTCGTCAGTGGTCTTATCTTGGATCAGATCAATACCAATCGTAGGCTAATGGCTAGGAATCTCCA
CCAACAGGAGGTTTTGAGTGTGGCAACCATGGCAGTTCAGACCAAACAGGATCAGTTGACCTTAAATGGCATCACAGTGA
CAGTAAAACGTAGCAAGCAAGGTATCGCGGTTTACGAATCAGGAAAGGAGATTATTCATGTCTCTCAATAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(1-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

37.838

97.368

0.368
  comGE Streptococcus mutans UA159

37.838

97.368

0.368