Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AS588_RS07255 Genome accession   NZ_CP014700
Coordinates   1585013..1585792 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain S499     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580013..1590792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS07225 (AS588_07225) fliH 1580057..1580812 (-) 756 WP_015388237.1 flagellar assembly protein FliH -
  AS588_RS07230 (AS588_07230) fliG 1580805..1581821 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  AS588_RS07235 (AS588_07235) fliF 1581834..1583444 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  AS588_RS07240 (AS588_07240) fliE 1583487..1583807 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  AS588_RS07245 (AS588_07245) flgC 1583818..1584270 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  AS588_RS07250 (AS588_07250) flgB 1584270..1584659 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  AS588_RS07255 (AS588_07255) codY 1585013..1585792 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AS588_RS07260 (AS588_07260) hslU 1585830..1587233 (-) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  AS588_RS07265 (AS588_07265) hslV 1587250..1587795 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  AS588_RS07270 (AS588_07270) xerC 1587811..1588728 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  AS588_RS07275 (AS588_07275) trmFO 1588798..1590105 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=173417 AS588_RS07255 WP_003154263.1 1585013..1585792(-) (codY) [Bacillus amyloliquefaciens strain S499]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=173417 AS588_RS07255 WP_003154263.1 1585013..1585792(-) (codY) [Bacillus amyloliquefaciens strain S499]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment