Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AS588_RS03920 | Genome accession | NZ_CP014700 |
| Coordinates | 781614..781880 (+) | Length | 88 a.a. |
| NCBI ID | WP_042635730.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain S499 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 776614..786880
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AS588_RS03900 (AS588_03900) | - | 776884..778185 (-) | 1302 | WP_014305416.1 | hemolysin family protein | - |
| AS588_RS03905 (AS588_03905) | - | 778331..779281 (+) | 951 | WP_014305415.1 | magnesium transporter CorA family protein | - |
| AS588_RS03910 (AS588_03910) | comGA | 779473..780543 (+) | 1071 | WP_003153083.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AS588_RS03915 (AS588_03915) | comGB | 780530..781567 (+) | 1038 | WP_014305414.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AS588_RS03920 (AS588_03920) | comGC | 781614..781880 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AS588_RS03925 (AS588_03925) | comGD | 781870..782307 (+) | 438 | WP_015388002.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AS588_RS03930 (AS588_03930) | comGE | 782291..782605 (+) | 315 | WP_015388003.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| AS588_RS03935 (AS588_03935) | comGF | 782619..783014 (+) | 396 | WP_015388004.1 | competence type IV pilus minor pilin ComGF | - |
| AS588_RS03940 (AS588_03940) | comGG | 783015..783392 (+) | 378 | WP_015388005.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AS588_RS03945 (AS588_03945) | - | 783449..783628 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| AS588_RS03950 (AS588_03950) | - | 783668..783997 (-) | 330 | WP_003153097.1 | DUF3889 domain-containing protein | - |
| AS588_RS03955 (AS588_03955) | tapA | 784257..784928 (+) | 672 | WP_015388007.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AS588_RS03960 (AS588_03960) | sipW | 784900..785484 (+) | 585 | WP_012117977.1 | signal peptidase I SipW | - |
| AS588_RS03965 (AS588_03965) | tasA | 785548..786333 (+) | 786 | WP_015388008.1 | biofilm matrix protein TasA | - |
| AS588_RS03970 (AS588_03970) | sinR | 786381..786716 (-) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 9721.32 Da Isoelectric Point: 6.2027
>NTDB_id=173405 AS588_RS03920 WP_042635730.1 781614..781880(+) (comGC) [Bacillus amyloliquefaciens strain S499]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
Nucleotide
Download Length: 267 bp
>NTDB_id=173405 AS588_RS03920 WP_042635730.1 781614..781880(+) (comGC) [Bacillus amyloliquefaciens strain S499]
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
74.648 |
80.682 |
0.602 |