Detailed information NTG0173306

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: A0U95_RS24945
• Genome accession: NZ_CP014693
• Coordinates: 5696683..5698929 (+)
• Length: 748 a.a.
• NCBI ID: WP_069971469.1
• Uniprot ID: -
• Organism: Pseudomonas brassicacearum strain L13-6-12
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5691683..5703929

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A0U95_RS24920 (A0U95_24880)	-	5692757..5693416 (+)	660	WP_013694005.1	transglutaminase-like domain-containing protein	-
A0U95_RS24925 (A0U95_24885)	-	5693462..5694085 (+)	624	WP_003204303.1	glutathione S-transferase family protein	-
A0U95_RS24930 (A0U95_24890)	-	5694222..5695154 (+)	933	WP_003204301.1	ABC transporter ATP-binding protein	-
A0U95_RS24935 (A0U95_24895)	-	5695157..5695936 (+)	780	WP_003204300.1	ABC transporter permease	-
A0U95_RS24940 (A0U95_24900)	-	5696023..5696538 (-)	516	WP_003204298.1	DUF2062 domain-containing protein	-
A0U95_RS24945 (A0U95_24905)	comA	5696683..5698929 (+)	2247	WP_069971469.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
A0U95_RS24950 (A0U95_24910)	exbB	5699026..5699661 (+)	636	WP_162254895.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
A0U95_RS24955 (A0U95_24915)	-	5699658..5700086 (+)	429	WP_013694002.1	ExbD/TolR family protein	-
A0U95_RS24960 (A0U95_24920)	lpxK	5700086..5701096 (+)	1011	WP_069971470.1	tetraacyldisaccharide 4'-kinase	-
A0U95_RS24965 (A0U95_24925)	-	5701120..5701305 (+)	186	WP_003179363.1	Trm112 family protein	-
A0U95_RS24970 (A0U95_24930)	kdsB	5701302..5702066 (+)	765	WP_003204286.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
A0U95_RS24975 (A0U95_24935)	-	5702066..5702530 (+)	465	WP_013694001.1	low molecular weight protein-tyrosine-phosphatase	-
A0U95_RS24980 (A0U95_24940)	murB	5702527..5703546 (+)	1020	WP_003204282.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81068.37 Da
• Isoelectric Point: 9.3794

>NTDB_id=173306 A0U95_RS24945 WP_069971469.1 5696683..5698929(+) (comA) [Pseudomonas brassicacearum strain L13-6-12]
MRTGLVALALGLLAPIFLPALPPIWLITAMPVLALMVLPFRTYPLGFFLFGLAWACLSAQCALDDRLPIALDGETRWVEG
RVIGLPQQGEGVMRFELADVHSRRTRLPTAMRLAWFGGPPVNSGERWRLAVKLKRPSGLLNPHGFDYAAWLLSRGIGATG
TIKDGHLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLAWLPWACGLAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVALGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPLAL
LGTALLPVPLMGEGLLWIAGGLLDLLFKGLALVAGRMPAWVPAAVPPWALGIAAFGAFLLLLPKGVPLRVLGWPMVLLMV
FPPQEHLPQGHAEIWQLDVGQGLAVLVRTRRHALLYDAGPRFGEADAGERVVLPTLRKLGVRRLDLMLLSHSDADHAGGA
RAVRNGLPTLEVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLVVEAGGERLLLTGDIDTPAE
RALLDEALAVPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLLL
GAFEVPHTEAGHRRYWRDPPAVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=173306 A0U95_RS24945 WP_069971469.1 5696683..5698929(+) (comA) [Pseudomonas brassicacearum strain L13-6-12]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTGCCGGCACTGCCGCCGATATGGCTGAT
TACAGCCATGCCGGTGCTGGCGCTGATGGTGTTGCCGTTTCGAACCTACCCGCTGGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTGTGCGCTGGATGACCGGTTACCCATCGCGCTCGACGGCGAAACCCGCTGGGTCGAGGGT
CGAGTGATCGGTTTGCCGCAACAGGGCGAAGGCGTGATGCGCTTCGAACTGGCCGATGTCCATTCACGCCGTACCCGTCT
ACCGACGGCGATGCGTCTCGCCTGGTTCGGTGGTCCGCCGGTCAACAGCGGCGAACGATGGCGATTGGCGGTGAAACTCA
AGCGGCCCAGTGGGCTGCTGAACCCGCACGGCTTCGACTATGCCGCCTGGTTGCTGAGCCGCGGCATCGGCGCGACCGGT
ACCATCAAGGATGGCCATCTCCTGCAAGCGGCCCGGGGGGCCTGGCGTGACGAGGTGCGCCAGGCGCTGGCACAGGTCGA
TGCCCACGGCCGCTCCGGTGCGCTGGCGGCTCTGGTGCTGGGCGACGGCGGCGGGCTGAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCCGGCGCGGCGCGTTATGGTCTTTGGCCGGTGGGTCTGGCCTGGTTGCCTTGGGCCTGTGGGCTGGCCTTCTGTGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGCTGCTGT
GGCGCTTGCGTTTCAAACAGCCAGATCCGTGGTGGGCATGGCTGCTGGCCTTCGTCGGGGTGCTGGTGTTCGACCCGCTT
GCCAGCTTGCGGCCGGGGTTCTGGTTGTCGTTTGCGGCCGTGGCCATATTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTCGCGCTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGTT
TGCCGGTCAGCCTCAGCGGGCCGTTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTATTGCCGCTGGCGCTG
CTTGGCACGGCATTGTTGCCGGTGCCGCTCATGGGCGAAGGCCTGCTGTGGATTGCCGGTGGGCTGCTCGATCTGCTGTT
CAAGGGGCTGGCACTGGTTGCCGGACGAATGCCGGCCTGGGTTCCTGCCGCAGTCCCGCCCTGGGCCTTGGGCATCGCCG
CCTTCGGTGCTTTTTTGCTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCGATGGTGTTGCTGATGGTT
TTTCCACCGCAAGAACACCTGCCGCAAGGGCACGCCGAGATCTGGCAACTGGACGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGGCGGCACGCCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAGGCTGACGCGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAACTGGGTGTGCGCCGCTTGGACCTGATGTTGCTCAGCCATTCCGACGCCGATCACGCTGGCGGTGCC
CGCGCCGTGCGCAATGGGCTGCCGACGCTGGAAGTGATCAGCGGCGATCCGGACGCGCTGCCCGCCGAACTGCTGGCCGG
GCCTTGCGACAGTGGCAGGCGCTGGGAATGGGATGGGGTCGGGTTCGAACTGTGGCGGTGGGCCTCTGCCGTCGAGAGCA
ACCAGAAGTCCTGTGTCTTGGTGGTGGAGGCGGGCGGTGAACGCCTGCTGCTGACCGGCGATATCGACACCCCTGCCGAG
CGCGCCTTGCTCGACGAGGCCCTGGCCGTGCCGATCCAGTGGCTGGCCGCGCCGCATCACGGCAGTCGCAGTTCGTCGTC
GATGGCGTTGCTGTCGCGTCTCAAGCCGCATTCAGTATTGATCTCCCGAGGGCAGGGCAACGCATTCGGCCACCCTCATC
CCCAGGTGATGGCCCGGTATCGGCGCTCGGGCCTGGCGATCTACGACAGTGCCGAGCAGGGCGCCATTCGTCTGCTACTG
GGGGCTTTCGAGGTGCCGCACACCGAGGCCGGGCACCGCCGCTACTGGCGTGATCCGCCCGCAGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-165)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.313	95.722	0.587
comA	Ralstonia pseudosolanacearum GMI1000	32.038	100	0.364