Detailed information NTG0173265

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BSF20_RS13760
• Genome accession: NZ_CP018152
• Coordinates: 2643306..2644574 (-)
• Length: 422 a.a.
• NCBI ID: WP_032856906.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain LM2303
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2638306..2649574

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSF20_RS20345	-	2638545..2638715 (+)	171	WP_094247699.1	YrzK family protein	-
BSF20_RS13740 (BSF20_13470)	hisS	2639072..2640346 (+)	1275	WP_003152726.1	histidine--tRNA ligase	-
BSF20_RS13745 (BSF20_13475)	aspS	2640361..2642139 (+)	1779	WP_025853063.1	aspartate--tRNA ligase	-
BSF20_RS13755 (BSF20_13485)	-	2642466..2643230 (+)	765	WP_003152728.1	ThiF family adenylyltransferase	-
BSF20_RS13760 (BSF20_13490)	rarA	2643306..2644574 (-)	1269	WP_032856906.1	replication-associated recombination protein A	Machinery gene
BSF20_RS13765 (BSF20_13495)	cymR	2644769..2645185 (+)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
BSF20_RS13770 (BSF20_13500)	-	2645204..2646343 (+)	1140	WP_003152731.1	cysteine desulfurase family protein	-
BSF20_RS13775 (BSF20_13505)	mnmA	2646380..2647495 (+)	1116	WP_014305492.1	tRNA 2-thiouridine(34) synthase MnmA	-
BSF20_RS13780 (BSF20_13510)	-	2647583..2648203 (+)	621	WP_088005508.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46689.53 Da
• Isoelectric Point: 7.9153

>NTDB_id=173265 BSF20_RS13760 WP_032856906.1 2643306..2644574(-) (rarA) [Bacillus amyloliquefaciens strain LM2303]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIRQALER
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=173265 BSF20_RS13760 WP_032856906.1 2643306..2644574(-) (rarA) [Bacillus amyloliquefaciens strain LM2303]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGTCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCGAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGATGAAGTGCACAGACTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCAACGACCGCCAATCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAGGCAGGCATTGGAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGATGCGATGGATCATTTCGCACAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCGTTCCAAAAATCGATCCGGGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCACGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCACCGAAATCAAACTCCGCCATTTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCCCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.974	99.763	0.908