Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BKN48_RS18130 Genome accession   NZ_CP017676
Coordinates   3447786..3448235 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain VV2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3442786..3453235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS18090 (BKN48_18090) ctaE 3442804..3443427 (+) 624 WP_038828405.1 cytochrome c oxidase subunit III -
  BKN48_RS18095 (BKN48_18095) ctaF 3443430..3443762 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  BKN48_RS18100 (BKN48_18100) ctaG 3443789..3444682 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  BKN48_RS18105 (BKN48_18105) ylbA 3444714..3445076 (-) 363 WP_003232238.1 YugN family protein -
  BKN48_RS18110 (BKN48_18110) ylbB 3445216..3445662 (+) 447 WP_003221362.1 CBS domain-containing protein -
  BKN48_RS18115 (BKN48_18115) ylbC 3445746..3446786 (+) 1041 WP_032725641.1 CAP domain-containing protein -
  BKN48_RS18120 (BKN48_18120) ylbD 3447017..3447415 (+) 399 WP_032725642.1 YlbD family protein -
  BKN48_RS18125 (BKN48_18125) ylbE 3447431..3447670 (+) 240 WP_003232231.1 YlbE-like family protein -
  BKN48_RS18130 (BKN48_18130) ylbF 3447786..3448235 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BKN48_RS18135 (BKN48_18135) ylbG 3448290..3448562 (+) 273 WP_009967171.1 YlbG family protein -
  BKN48_RS18140 (BKN48_18140) rsmD 3448885..3449439 (+) 555 WP_070548911.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BKN48_RS18145 (BKN48_18145) coaD 3449444..3449929 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BKN48_RS18150 (BKN48_18150) spoVV 3449940..3451166 (-) 1227 WP_070548913.1 dipicolinic acid transporter SpoVV -
  BKN48_RS18155 (BKN48_18155) ylbK 3451347..3452129 (+) 783 WP_003232221.1 patatin family protein -
  BKN48_RS18160 (BKN48_18160) sepM 3452131..3453156 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=170690 BKN48_RS18130 WP_003221370.1 3447786..3448235(+) (ylbF) [Bacillus subtilis strain VV2]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=170690 BKN48_RS18130 WP_003221370.1 3447786..3448235(+) (ylbF) [Bacillus subtilis strain VV2]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment