Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   BKN48_RS16205 Genome accession   NZ_CP017676
Coordinates   3100606..3101523 (+) Length   305 a.a.
NCBI ID   WP_021479549.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3095606..3106523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS16190 (BKN48_16190) trpS 3096187..3097179 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  BKN48_RS16195 (BKN48_16195) oppA 3097923..3099560 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  BKN48_RS16200 (BKN48_16200) oppB 3099667..3100602 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  BKN48_RS16205 (BKN48_16205) amiD 3100606..3101523 (+) 918 WP_021479549.1 oligopeptide ABC transporter permease OppC Regulator
  BKN48_RS16210 (BKN48_16210) oppD 3101528..3102604 (+) 1077 WP_080481262.1 oligopeptide ABC transporter ATP-binding protein OppD -
  BKN48_RS16215 (BKN48_16215) oppF 3102606..3103523 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  BKN48_RS16220 (BKN48_16220) yjbB 3103630..3104847 (+) 1218 WP_080481263.1 MFS transporter -
  BKN48_RS16225 (BKN48_16225) yjbC 3105011..3105589 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  BKN48_RS16230 (BKN48_16230) spx 3105770..3106165 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=170675 BKN48_RS16205 WP_021479549.1 3100606..3101523(+) (amiD) [Bacillus subtilis strain VV2]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIMLIILMAIFAPVFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=170675 BKN48_RS16205 WP_021479549.1 3100606..3101523(+) (amiD) [Bacillus subtilis strain VV2]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCATGCTCATTA
TCCTTATGGCAATTTTTGCGCCGGTGTTCTCAAGGTATGATTATTCAACTACTAATCTTTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGCACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGAGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGAATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.599

100

0.361
  amiD Streptococcus thermophilus LMD-9

35.599

100

0.361

Multiple sequence alignment