Detailed information
Bioinformatically predicted
Overview
| Name | recD2 | Type | Machinery gene |
| Locus tag | GT3570_RS12540 | Genome accession | NZ_CP014335 |
| Coordinates | 2467278..2469638 (-) | Length | 786 a.a. |
| NCBI ID | WP_011232038.1 | Uniprot ID | Q5KWU0 |
| Organism | Geobacillus thermoleovorans strain KCTC 3570 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2431259..2469638 | 2467278..2469638 | within | 0 |
Gene organization within MGE regions
Location: 2431259..2469638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GT3570_RS12310 (GT3570_12310) | - | 2431259..2432752 (-) | 1494 | WP_047752759.1 | recombinase family protein | - |
| GT3570_RS12315 (GT3570_12315) | - | 2432945..2433196 (-) | 252 | WP_025949280.1 | hypothetical protein | - |
| GT3570_RS12320 (GT3570_12320) | - | 2433180..2433545 (-) | 366 | WP_050437068.1 | hypothetical protein | - |
| GT3570_RS12325 (GT3570_12325) | - | 2433542..2433880 (-) | 339 | WP_025949282.1 | hypothetical protein | - |
| GT3570_RS12330 (GT3570_12330) | - | 2433849..2434505 (-) | 657 | WP_047752758.1 | ATPase | - |
| GT3570_RS12335 (GT3570_12335) | - | 2434505..2434852 (-) | 348 | WP_047752757.1 | hypothetical protein | - |
| GT3570_RS12340 (GT3570_12340) | - | 2434852..2435253 (-) | 402 | WP_047752756.1 | hypothetical protein | - |
| GT3570_RS18535 | - | 2435253..2435396 (-) | 144 | WP_156484085.1 | hypothetical protein | - |
| GT3570_RS12345 (GT3570_12345) | - | 2435387..2435668 (-) | 282 | WP_062898830.1 | hypothetical protein | - |
| GT3570_RS12350 (GT3570_12350) | - | 2435670..2436143 (-) | 474 | WP_047752754.1 | hypothetical protein | - |
| GT3570_RS12355 (GT3570_12355) | - | 2436300..2438075 (-) | 1776 | WP_156484086.1 | fibronectin type III domain-containing protein | - |
| GT3570_RS19170 | - | 2438086..2439159 (-) | 1074 | WP_240432117.1 | hypothetical protein | - |
| GT3570_RS12365 (GT3570_12365) | - | 2439224..2439415 (-) | 192 | WP_023634630.1 | hypothetical protein | - |
| GT3570_RS12370 (GT3570_12370) | - | 2439472..2439687 (-) | 216 | WP_062898832.1 | hypothetical protein | - |
| GT3570_RS12375 (GT3570_12375) | - | 2439692..2439850 (-) | 159 | WP_023634628.1 | hypothetical protein | - |
| GT3570_RS18760 | - | 2439862..2440002 (-) | 141 | WP_162924030.1 | hypothetical protein | - |
| GT3570_RS19175 | - | 2439996..2440130 (-) | 135 | WP_256363766.1 | hypothetical protein | - |
| GT3570_RS18765 | - | 2440135..2440311 (-) | 177 | WP_167552188.1 | hypothetical protein | - |
| GT3570_RS18085 | fbpA | 2441033..2441209 (-) | 177 | WP_075261363.1 | Fur-regulated basic protein FbpA | - |
| GT3570_RS12385 (GT3570_12385) | - | 2441225..2441653 (-) | 429 | WP_025949292.1 | hypothetical protein | - |
| GT3570_RS12390 (GT3570_12390) | - | 2441771..2444062 (-) | 2292 | WP_062898833.1 | phage/plasmid primase, P4 family | - |
| GT3570_RS12395 (GT3570_12395) | - | 2444073..2444285 (-) | 213 | WP_050437069.1 | hypothetical protein | - |
| GT3570_RS19180 | - | 2444380..2444514 (-) | 135 | WP_023634618.1 | hypothetical protein | - |
| GT3570_RS12400 (GT3570_12400) | - | 2444537..2444731 (-) | 195 | WP_025949295.1 | hypothetical protein | - |
| GT3570_RS12405 (GT3570_12405) | - | 2444774..2444992 (-) | 219 | WP_025949296.1 | helix-turn-helix transcriptional regulator | - |
| GT3570_RS12410 (GT3570_12410) | - | 2445153..2445488 (+) | 336 | WP_025949297.1 | helix-turn-helix domain-containing protein | - |
| GT3570_RS12415 (GT3570_12415) | - | 2445485..2446165 (+) | 681 | WP_240432115.1 | restriction endonuclease | - |
| GT3570_RS12420 (GT3570_12420) | - | 2446319..2446828 (+) | 510 | WP_025949299.1 | ImmA/IrrE family metallo-endopeptidase | - |
| GT3570_RS12425 (GT3570_12425) | - | 2446844..2447197 (-) | 354 | Protein_2472 | sigma-70 family RNA polymerase sigma factor | - |
| GT3570_RS18090 | - | 2447723..2447866 (-) | 144 | WP_011232016.1 | YrzI family small protein | - |
| GT3570_RS12435 (GT3570_12435) | - | 2448242..2448490 (-) | 249 | WP_011232017.1 | YrhC family protein | - |
| GT3570_RS12440 (GT3570_12440) | - | 2448553..2449686 (-) | 1134 | WP_011232018.1 | bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase | - |
| GT3570_RS12445 (GT3570_12445) | - | 2449689..2450612 (-) | 924 | WP_011232019.1 | PLP-dependent cysteine synthase family protein | - |
| GT3570_RS12450 (GT3570_12450) | mtnN | 2450890..2451597 (-) | 708 | WP_014196394.1 | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | - |
| GT3570_RS12455 (GT3570_12455) | - | 2451612..2452259 (-) | 648 | WP_011232021.1 | class I SAM-dependent methyltransferase | - |
| GT3570_RS12460 (GT3570_12460) | - | 2452449..2452658 (+) | 210 | WP_011232022.1 | YrzA family protein | - |
| GT3570_RS12465 (GT3570_12465) | - | 2452772..2453395 (-) | 624 | WP_020278376.1 | YrrS family protein | - |
| GT3570_RS12470 (GT3570_12470) | - | 2453462..2455234 (-) | 1773 | WP_011232024.1 | penicillin-binding protein 2 | - |
| GT3570_RS12475 (GT3570_12475) | greA | 2455356..2455832 (-) | 477 | WP_011232025.1 | transcription elongation factor GreA | - |
| GT3570_RS12480 (GT3570_12480) | udk | 2455943..2456578 (-) | 636 | WP_011232026.1 | uridine kinase | - |
| GT3570_RS12485 (GT3570_12485) | - | 2456580..2457848 (-) | 1269 | WP_011232027.1 | U32 family peptidase | - |
| GT3570_RS12490 (GT3570_12490) | - | 2457867..2458796 (-) | 930 | WP_062898834.1 | peptidase U32 family protein | - |
| GT3570_RS12495 (GT3570_12495) | - | 2458793..2459446 (-) | 654 | WP_014196397.1 | O-methyltransferase | - |
| GT3570_RS12500 (GT3570_12500) | mltG | 2459884..2460975 (-) | 1092 | WP_011232030.1 | endolytic transglycosylase MltG | - |
| GT3570_RS12505 (GT3570_12505) | - | 2461221..2461520 (-) | 300 | WP_011232031.1 | DUF1292 domain-containing protein | - |
| GT3570_RS12510 (GT3570_12510) | ruvX | 2461536..2461952 (-) | 417 | WP_011232032.1 | Holliday junction resolvase RuvX | - |
| GT3570_RS12515 (GT3570_12515) | - | 2461957..2462223 (-) | 267 | WP_011232033.1 | IreB family regulatory phosphoprotein | - |
| GT3570_RS12520 (GT3570_12520) | alaS | 2462291..2464927 (-) | 2637 | WP_014196399.1 | alanine--tRNA ligase | - |
| GT3570_RS12525 (GT3570_12525) | - | 2465246..2466307 (-) | 1062 | WP_021321998.1 | AI-2E family transporter | - |
| GT3570_RS18105 | - | 2466426..2466560 (-) | 135 | WP_013144658.1 | YrzQ family protein | - |
| GT3570_RS12530 (GT3570_12530) | - | 2466572..2466763 (-) | 192 | WP_008881018.1 | hypothetical protein | - |
| GT3570_RS12535 (GT3570_12535) | - | 2466779..2467252 (-) | 474 | WP_014196401.1 | PRC-barrel domain-containing protein | - |
| GT3570_RS12540 (GT3570_12540) | recD2 | 2467278..2469638 (-) | 2361 | WP_011232038.1 | ATP-dependent RecD-like DNA helicase | Machinery gene |
Sequence
Protein
Download Length: 786 a.a. Molecular weight: 86551.19 Da Isoelectric Point: 5.0447
>NTDB_id=170410 GT3570_RS12540 WP_011232038.1 2467278..2469638(-) (recD2) [Geobacillus thermoleovorans strain KCTC 3570]
MQEQQILALDGRTFIKGVCLAVIFHNEETLYTVVRVRVEETNEAPVEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAASQFRKQLPNTKEGVIHYLSSGLFKGIGKKTAAAIVETLGENAIAAILRDPRALERVPKLTKKKAKQLYDALRAHEGL
EQTMIALAQLGFGPQLAMKIYQAYGEEAVDIIHENPYQLVEDIEGIGFGRADEIGRQLGISGSHPARLRAASLFVLEQAC
LQEGHVYLREEELMERIGELLDGRLSGAVDGRAISQTLLMLSEEGKLIAEQGRYYLPSLYFAEKGIVSNIKRLLGQTPPS
AFAESEFLLALGALEERLGMQYAPQQREAIQQALSSPLFILTGGPGTGKTTVIKGIVELFAALNGLSLDPADYKQGEPFP
VLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSRDENEPISGKLLVIDEMSMVDTWLANQLLKAVPNGMQVIFVG
DEDQLPSVGPGQVLKDLLSSGVIPFARLTEVYRQAEGSSIIELAHEMKRGVVPDDLTAPKADRSFIRCRAGQVVDVVRQI
ADNARKKGFSVKDIQVLAPMYRGPAGIDQLNKALQELFNPPAEGKRELSVGEVVYRVGDKVLQLVNQPEDNVFNGDIGEI
VAIFYAKENIEKQDLLVVSFDGIEVTYTRQDLGQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSKQ
FLVLCGEEEAFRFGVAKQSDGARQTALAEKLAGAAAPFVEVELPFEEANMGMENVTPYDFMGDEPS
MQEQQILALDGRTFIKGVCLAVIFHNEETLYTVVRVRVEETNEAPVEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAASQFRKQLPNTKEGVIHYLSSGLFKGIGKKTAAAIVETLGENAIAAILRDPRALERVPKLTKKKAKQLYDALRAHEGL
EQTMIALAQLGFGPQLAMKIYQAYGEEAVDIIHENPYQLVEDIEGIGFGRADEIGRQLGISGSHPARLRAASLFVLEQAC
LQEGHVYLREEELMERIGELLDGRLSGAVDGRAISQTLLMLSEEGKLIAEQGRYYLPSLYFAEKGIVSNIKRLLGQTPPS
AFAESEFLLALGALEERLGMQYAPQQREAIQQALSSPLFILTGGPGTGKTTVIKGIVELFAALNGLSLDPADYKQGEPFP
VLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSRDENEPISGKLLVIDEMSMVDTWLANQLLKAVPNGMQVIFVG
DEDQLPSVGPGQVLKDLLSSGVIPFARLTEVYRQAEGSSIIELAHEMKRGVVPDDLTAPKADRSFIRCRAGQVVDVVRQI
ADNARKKGFSVKDIQVLAPMYRGPAGIDQLNKALQELFNPPAEGKRELSVGEVVYRVGDKVLQLVNQPEDNVFNGDIGEI
VAIFYAKENIEKQDLLVVSFDGIEVTYTRQDLGQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSKQ
FLVLCGEEEAFRFGVAKQSDGARQTALAEKLAGAAAPFVEVELPFEEANMGMENVTPYDFMGDEPS
Nucleotide
Download Length: 2361 bp
>NTDB_id=170410 GT3570_RS12540 WP_011232038.1 2467278..2469638(-) (recD2) [Geobacillus thermoleovorans strain KCTC 3570]
TTGCAAGAGCAACAAATCCTCGCCCTTGACGGACGCACGTTCATTAAAGGAGTGTGCTTGGCGGTCATTTTTCATAATGA
GGAAACATTGTACACGGTCGTCCGCGTGCGCGTTGAGGAAACGAACGAAGCGCCCGTTGAGGAGGAAGTCGTCGTCACCG
GCTATTTTCCGCGTTTAAACGAAGGGGACGTCTACATCTTTTACGGACAATTCCGCCAACATCCGCGTTTTGGCCGCCAA
TATGCGGCTAGTCAGTTCCGCAAACAGCTTCCGAACACGAAAGAAGGAGTCATTCATTATTTATCGAGCGGTTTGTTTAA
AGGAATCGGCAAAAAAACGGCTGCGGCGATTGTCGAGACGCTCGGCGAAAACGCGATCGCCGCGATTTTGCGCGACCCCA
GGGCGCTAGAGCGTGTGCCGAAGCTGACGAAAAAAAAGGCGAAGCAGCTGTACGATGCGCTTCGCGCCCACGAAGGGCTT
GAGCAAACGATGATCGCCCTCGCCCAGCTCGGTTTTGGCCCGCAGCTGGCCATGAAAATTTACCAAGCGTATGGCGAAGA
AGCGGTTGACATCATCCACGAGAACCCGTACCAGCTCGTTGAGGATATCGAAGGGATCGGCTTTGGCCGCGCTGATGAAA
TCGGGCGCCAGCTCGGCATTTCCGGCAGCCATCCGGCCCGGCTGCGCGCCGCCTCGTTGTTTGTTCTTGAACAGGCGTGC
TTGCAGGAAGGGCACGTTTATTTGCGCGAGGAAGAGCTGATGGAGCGCATCGGGGAGCTGCTTGACGGAAGGCTGAGCGG
TGCGGTGGATGGACGAGCGATCAGCCAAACGCTTCTGATGTTAAGCGAAGAAGGGAAGCTGATCGCCGAGCAAGGGCGTT
ATTATCTCCCTTCCCTTTACTTCGCCGAGAAAGGGATCGTCTCCAACATTAAGCGGCTGCTCGGGCAGACGCCGCCGTCG
GCGTTTGCCGAGTCGGAGTTTTTGCTGGCGCTTGGGGCGCTTGAGGAACGGCTTGGCATGCAATATGCCCCCCAGCAAAG
GGAAGCGATCCAACAAGCGCTTTCTTCGCCGCTGTTTATTTTGACCGGCGGTCCGGGAACGGGGAAAACGACGGTCATCA
AAGGCATCGTCGAGCTGTTTGCCGCCCTAAACGGCCTGTCTCTTGACCCGGCTGACTACAAACAAGGCGAGCCGTTTCCG
GTGCTGCTGGCCGCACCGACCGGCCGAGCGGCGAAGCGGATGAGCGAGGCGACCGGGCTGCCGGCGGCGACGATCCACCG
CTTGCTCGGCTGGAATGGGGCGGAAGGGTTCAGCCGCGACGAGAACGAACCGATTTCCGGCAAGCTGCTTGTCATCGATG
AGATGTCGATGGTCGACACGTGGCTCGCCAACCAGCTGTTAAAAGCCGTGCCAAACGGCATGCAAGTCATTTTTGTCGGC
GATGAGGATCAATTGCCATCCGTCGGGCCAGGGCAAGTGCTGAAAGACTTGCTCTCTTCAGGCGTCATTCCGTTCGCTCG
GTTGACCGAGGTGTATCGCCAGGCGGAAGGATCATCGATCATCGAGCTTGCTCATGAGATGAAGCGCGGCGTCGTGCCGG
ACGATTTGACCGCTCCGAAGGCAGACCGTTCATTCATCCGCTGCCGTGCGGGCCAGGTCGTCGATGTCGTGCGGCAAATC
GCGGACAACGCGCGCAAAAAAGGGTTTTCCGTCAAAGATATTCAAGTGCTCGCCCCGATGTACCGTGGTCCAGCGGGCAT
TGACCAATTGAACAAAGCGCTTCAAGAGCTGTTCAACCCGCCGGCTGAGGGGAAGCGGGAGCTGTCGGTCGGTGAGGTCG
TCTACCGCGTCGGCGATAAGGTGCTGCAGCTCGTCAATCAACCGGAAGACAATGTGTTTAACGGCGACATCGGCGAAATC
GTTGCCATTTTTTACGCCAAAGAAAATATCGAAAAGCAAGACTTGCTCGTCGTCTCGTTTGATGGCATTGAAGTGACGTA
CACACGGCAAGATTTAGGACAAATCACCCATGCGTACTGCTGTTCGGTTCATAAGGCGCAAGGAAGCGAGTTTCCAATCG
TCATTTTGCCCGTCGTCAAAAGCTATTACCGGATGTTGAAACGGAATTTGTTGTATACTGCGGTGACAAGAAGCAAGCAG
TTTCTCGTTTTATGCGGGGAAGAGGAAGCGTTTCGATTCGGCGTCGCAAAACAAAGCGACGGAGCGCGCCAGACGGCGCT
CGCTGAGAAGCTGGCGGGGGCGGCGGCGCCGTTTGTCGAGGTCGAACTGCCGTTTGAAGAGGCGAACATGGGGATGGAAA
ACGTTACGCCGTATGACTTTATGGGCGATGAGCCAAGCTAA
TTGCAAGAGCAACAAATCCTCGCCCTTGACGGACGCACGTTCATTAAAGGAGTGTGCTTGGCGGTCATTTTTCATAATGA
GGAAACATTGTACACGGTCGTCCGCGTGCGCGTTGAGGAAACGAACGAAGCGCCCGTTGAGGAGGAAGTCGTCGTCACCG
GCTATTTTCCGCGTTTAAACGAAGGGGACGTCTACATCTTTTACGGACAATTCCGCCAACATCCGCGTTTTGGCCGCCAA
TATGCGGCTAGTCAGTTCCGCAAACAGCTTCCGAACACGAAAGAAGGAGTCATTCATTATTTATCGAGCGGTTTGTTTAA
AGGAATCGGCAAAAAAACGGCTGCGGCGATTGTCGAGACGCTCGGCGAAAACGCGATCGCCGCGATTTTGCGCGACCCCA
GGGCGCTAGAGCGTGTGCCGAAGCTGACGAAAAAAAAGGCGAAGCAGCTGTACGATGCGCTTCGCGCCCACGAAGGGCTT
GAGCAAACGATGATCGCCCTCGCCCAGCTCGGTTTTGGCCCGCAGCTGGCCATGAAAATTTACCAAGCGTATGGCGAAGA
AGCGGTTGACATCATCCACGAGAACCCGTACCAGCTCGTTGAGGATATCGAAGGGATCGGCTTTGGCCGCGCTGATGAAA
TCGGGCGCCAGCTCGGCATTTCCGGCAGCCATCCGGCCCGGCTGCGCGCCGCCTCGTTGTTTGTTCTTGAACAGGCGTGC
TTGCAGGAAGGGCACGTTTATTTGCGCGAGGAAGAGCTGATGGAGCGCATCGGGGAGCTGCTTGACGGAAGGCTGAGCGG
TGCGGTGGATGGACGAGCGATCAGCCAAACGCTTCTGATGTTAAGCGAAGAAGGGAAGCTGATCGCCGAGCAAGGGCGTT
ATTATCTCCCTTCCCTTTACTTCGCCGAGAAAGGGATCGTCTCCAACATTAAGCGGCTGCTCGGGCAGACGCCGCCGTCG
GCGTTTGCCGAGTCGGAGTTTTTGCTGGCGCTTGGGGCGCTTGAGGAACGGCTTGGCATGCAATATGCCCCCCAGCAAAG
GGAAGCGATCCAACAAGCGCTTTCTTCGCCGCTGTTTATTTTGACCGGCGGTCCGGGAACGGGGAAAACGACGGTCATCA
AAGGCATCGTCGAGCTGTTTGCCGCCCTAAACGGCCTGTCTCTTGACCCGGCTGACTACAAACAAGGCGAGCCGTTTCCG
GTGCTGCTGGCCGCACCGACCGGCCGAGCGGCGAAGCGGATGAGCGAGGCGACCGGGCTGCCGGCGGCGACGATCCACCG
CTTGCTCGGCTGGAATGGGGCGGAAGGGTTCAGCCGCGACGAGAACGAACCGATTTCCGGCAAGCTGCTTGTCATCGATG
AGATGTCGATGGTCGACACGTGGCTCGCCAACCAGCTGTTAAAAGCCGTGCCAAACGGCATGCAAGTCATTTTTGTCGGC
GATGAGGATCAATTGCCATCCGTCGGGCCAGGGCAAGTGCTGAAAGACTTGCTCTCTTCAGGCGTCATTCCGTTCGCTCG
GTTGACCGAGGTGTATCGCCAGGCGGAAGGATCATCGATCATCGAGCTTGCTCATGAGATGAAGCGCGGCGTCGTGCCGG
ACGATTTGACCGCTCCGAAGGCAGACCGTTCATTCATCCGCTGCCGTGCGGGCCAGGTCGTCGATGTCGTGCGGCAAATC
GCGGACAACGCGCGCAAAAAAGGGTTTTCCGTCAAAGATATTCAAGTGCTCGCCCCGATGTACCGTGGTCCAGCGGGCAT
TGACCAATTGAACAAAGCGCTTCAAGAGCTGTTCAACCCGCCGGCTGAGGGGAAGCGGGAGCTGTCGGTCGGTGAGGTCG
TCTACCGCGTCGGCGATAAGGTGCTGCAGCTCGTCAATCAACCGGAAGACAATGTGTTTAACGGCGACATCGGCGAAATC
GTTGCCATTTTTTACGCCAAAGAAAATATCGAAAAGCAAGACTTGCTCGTCGTCTCGTTTGATGGCATTGAAGTGACGTA
CACACGGCAAGATTTAGGACAAATCACCCATGCGTACTGCTGTTCGGTTCATAAGGCGCAAGGAAGCGAGTTTCCAATCG
TCATTTTGCCCGTCGTCAAAAGCTATTACCGGATGTTGAAACGGAATTTGTTGTATACTGCGGTGACAAGAAGCAAGCAG
TTTCTCGTTTTATGCGGGGAAGAGGAAGCGTTTCGATTCGGCGTCGCAAAACAAAGCGACGGAGCGCGCCAGACGGCGCT
CGCTGAGAAGCTGGCGGGGGCGGCGGCGCCGTTTGTCGAGGTCGAACTGCCGTTTGAAGAGGCGAACATGGGGATGGAAA
ACGTTACGCCGTATGACTTTATGGGCGATGAGCCAAGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD2 | Bacillus subtilis subsp. subtilis str. 168 |
59.975 |
100 |
0.604 |