Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AXE83_RS03215 Genome accession   NZ_CP014264
Coordinates   666618..667571 (+) Length   317 a.a.
NCBI ID   WP_060955411.1    Uniprot ID   A0A0X8JXD1
Organism   Streptococcus sp. oral taxon 431 strain F0610 (5-114)     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 661618..672571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE83_RS03200 (AXE83_03200) rpoE 662782..663357 (+) 576 WP_060955409.1 DNA-directed RNA polymerase subunit delta -
  AXE83_RS03205 (AXE83_03205) - 663676..665283 (+) 1608 WP_049548381.1 CTP synthase -
  AXE83_RS03210 (AXE83_03210) - 665402..666514 (+) 1113 WP_060955410.1 N-acetylmuramoyl-L-alanine amidase family protein -
  AXE83_RS03215 (AXE83_03215) comYH 666618..667571 (+) 954 WP_060955411.1 class I SAM-dependent methyltransferase Machinery gene
  AXE83_RS03220 (AXE83_03220) - 667621..668811 (+) 1191 WP_060955412.1 acetate kinase -
  AXE83_RS03225 (AXE83_03225) birA 668866..669801 (-) 936 WP_060955413.1 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA -
  AXE83_RS03230 (AXE83_03230) - 670011..671201 (+) 1191 WP_060955414.1 O-antigen ligase -
  AXE83_RS03235 (AXE83_03235) - 671251..671799 (-) 549 WP_060955415.1 NADPH-dependent FMN reductase -
  AXE83_RS03240 (AXE83_03240) - 672061..672549 (+) 489 WP_060955416.1 DUF5590 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36064.33 Da        Isoelectric Point: 4.2821

>NTDB_id=169991 AXE83_RS03215 WP_060955411.1 666618..667571(+) (comYH) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
MDFEKIEQAYTYLLENVQIIQNDLATNFYDALIEQNGIYLDGQTNLEDVKKNNQALKRLALRKEEWLRTYQFLLMKAAQT
EPLQANHQFTPDAIGHLMIFLMEQLWPAKDLSLLELGSGMGILGASFLTSMNKKVDYLGIEIDDLLIDLAASMAEVMDLQ
MGFVQGDAVRPQVLKESDFIVSDLPIGYYPDDQIASRYQVAAKDEHTYAHHLLMEQSLKYLKTGGYAIFLAPTDLLTSPQ
SDLLKSWLTDQAQLVAIVALPEDLFAQGAQSKTIFVVQKKVVEGFEPFVYPLASLRDPEILLEFKENFQNWCQEHEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=169991 AXE83_RS03215 WP_060955411.1 666618..667571(+) (comYH) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
ATGGATTTTGAAAAAATTGAACAAGCATATACCTATTTACTAGAAAATGTCCAAATCATTCAAAACGATTTGGCGACAAA
TTTTTACGATGCCTTGATTGAACAAAATGGAATCTATCTGGATGGTCAGACAAATCTGGAAGATGTCAAGAAAAACAATC
AAGCTTTAAAACGATTGGCTCTTCGAAAAGAAGAGTGGTTACGAACCTACCAATTCTTATTAATGAAGGCAGCGCAAACG
GAACCTCTTCAGGCCAACCACCAGTTTACACCAGATGCGATTGGTCACTTGATGATTTTTTTGATGGAGCAATTGTGGCC
TGCTAAAGATCTAAGTCTACTAGAATTGGGCTCTGGGATGGGAATTCTGGGGGCTAGCTTTTTAACGTCCATGAACAAAA
AGGTAGATTACCTAGGGATTGAGATAGACGACCTCTTGATTGATCTGGCGGCGAGTATGGCTGAAGTTATGGATCTTCAA
ATGGGCTTTGTCCAAGGAGATGCAGTACGTCCACAAGTATTAAAAGAAAGTGATTTTATTGTGAGCGACCTCCCGATTGG
CTACTACCCAGACGATCAGATTGCCTCACGTTATCAAGTGGCAGCAAAGGATGAACATACTTATGCTCATCATCTATTAA
TGGAGCAATCTCTCAAGTATCTTAAGACGGGAGGCTATGCTATTTTCCTTGCTCCAACAGATCTTTTGACGAGTCCCCAG
AGTGACCTCTTGAAATCCTGGCTGACTGATCAGGCTCAACTAGTAGCTATCGTAGCTTTACCAGAGGATCTCTTCGCTCA
AGGAGCCCAGTCTAAGACCATTTTTGTTGTACAAAAGAAGGTGGTAGAAGGCTTTGAGCCATTCGTTTATCCACTTGCTA
GTCTTCGTGATCCTGAAATTTTGTTGGAATTTAAGGAAAATTTTCAAAATTGGTGTCAAGAACATGAAATCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8JXD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

55.238

99.369

0.549
  comYH Streptococcus mutans UA140

55.238

99.369

0.549

Multiple sequence alignment