Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A4W85_RS05685 Genome accession   NZ_CP017570
Coordinates   1110423..1112186 (-) Length   587 a.a.
NCBI ID   WP_056946693.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.578     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105423..1117186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W85_RS05665 (A4W85_05605) - 1106220..1107197 (-) 978 WP_041820853.1 alpha-ketoacid dehydrogenase subunit beta -
  A4W85_RS05670 (A4W85_05610) pdhA 1107199..1108308 (-) 1110 WP_056946690.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  A4W85_RS05675 (A4W85_05615) - 1108631..1109314 (-) 684 WP_011374786.1 hypothetical protein -
  A4W85_RS05680 (A4W85_05620) def 1109817..1110374 (+) 558 WP_011374787.1 peptide deformylase -
  A4W85_RS05685 (A4W85_05625) rcrQ 1110423..1112186 (-) 1764 WP_056946693.1 ABC transporter ATP-binding protein Regulator
  A4W85_RS05690 (A4W85_05630) rcrP 1112173..1113912 (-) 1740 WP_056946696.1 ABC transporter ATP-binding protein Regulator
  A4W85_RS05695 (A4W85_05635) - 1113940..1114425 (-) 486 WP_251944589.1 hypothetical protein -
  A4W85_RS05700 (A4W85_05640) - 1114622..1114834 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  A4W85_RS05705 (A4W85_05645) rnjA 1114839..1116527 (+) 1689 WP_011374792.1 ribonuclease J1 -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65100.65 Da        Isoelectric Point: 6.2494

>NTDB_id=169367 A4W85_RS05685 WP_056946693.1 1110423..1112186(-) (rcrQ) [Latilactobacillus sakei strain TMW 1.578]
MKNIKVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVVMM
LTINLWMALLSLIMIPTSLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEERAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPADVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMTIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAEAKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=169367 A4W85_RS05685 WP_056946693.1 1110423..1112186(-) (rcrQ) [Latilactobacillus sakei strain TMW 1.578]
ATGAAGAATATTAAGGTGCTCAAACGCCTGATGCGCTATATTGGGCCGTATAAAATAACGTTCTGGTCAGCAATTACTGC
AACGGTGATTTCCGTTTTAGCGAATGCGCTATGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGTTACATTACTAAAGTGATTGCGATGATTCTCAGCTTTGCATTACTTTATCAAACG
ATGATGTTTCTGGGATCGTTTTTAATGACGCGTGCCGTCCAACACGCAATGCGTGATTTACGGCGGGATATCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGCAATATCTTGTCGCGGGTTACTAATGATGTTGATG
CAATTACCAATGCCTTGCAACAGAGTTTAATCCAAGTGGTGACCTCAATTTTGGGGATCATCATGGCGGTTGTCATGATG
TTGACGATTAATTTATGGATGGCATTACTATCCTTAATTATGATTCCGACCTCACTTTTGATTTCTAAAGCAATCATCAA
AAAGTCACAAGTTTACTTCCAAGGGCAACAAAATACCTTGGGTGAGATGAACGGCTATGTTCAAGAAAACTATGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGAACGAGCAGTTGATGAATTTGCAGCGATTACGGATCGATTGACTGAATTT
GGCTTCAAAGCGGCCTTTATTTCAGGGATTATGATGCCATTAGTGGGTTTGACGACTAACTTGACTTACGCTGGGATGGC
AACCTTGGGTGGTTACTATGTCTTGCACGGTGTCATTACGGTTGGTAACTTGCAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCGATTTCGCAAATCACACAATTATCCGGTGTGATGCAAGCCGCTGCCGCTGCGACACAACGAGTTTTTGAA
ATCTTAGATGAACCGATTGAACCAACTGATCAAGAAACGGCTGAATTACCGGCTGATGTTCAGGGGAAAGTTGAATTTAA
AGATGTCAGCTTTAGCTATGATCCAGCCAAACCGTTGATTCGTGATTTAAGTTTCACTGCTAATCCGGGCGATAAAATTG
CGATTGTTGGGCCAACTGGGGCCGGGAAAACGACGATGATTAATTTATTAATGCGTTTTTACGATGTCAGTTCTGGTCAA
ATCCTGATTGATGGCGTCGATACCCGCCAATTGAGTAAACAGACAGTTCGCTCACTCTTTGGGATGGTGCTGCAGGATGC
TTGGTTGTACCACACAACGATTACGGAAAATATTCGTTTTGGGAAGCTAGATGCCACTGAATATGAAGTCGTGGATGCTG
CCAAAACGGCTAATGTTGATCACTTTATCCATACATTGCCAAATGGCTATCAGATGACAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGACAAAAGCAACTCTTAACGATTGCTCGGGCAGTGATTGCTAATCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCAGTCGATACGCGCTTAGAAAGCTTATTACAAAAGGCGATGGAAAAAGTGATGCAAGGACGAACAAGCTTTG
TGATTGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTGATGGATCACGGTCAAATTGTTGAAAAAGGA
ACGCATGATGACTTATTAGCCGCTAATGGTGTTTATGCTAAGCTTTATAACAGTCAATTTGCAGAAGCAAAATTAAATGC
ATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-297)

ABC transporter (ABC_tran)

(361-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.857

100

0.429