Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A4W85_RS01435 Genome accession   NZ_CP017570
Coordinates   282465..284258 (+) Length   597 a.a.
NCBI ID   WP_251945149.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.578     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 277465..289258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W85_RS01415 (A4W85_01375) rpsN 277832..278101 (+) 270 WP_025016208.1 30S ribosomal protein S14 -
  A4W85_RS01420 (A4W85_01380) - 278746..279882 (+) 1137 WP_056947296.1 multidrug effflux MFS transporter -
  A4W85_RS01425 (A4W85_01385) - 279935..280606 (-) 672 WP_056947300.1 TetR/AcrR family transcriptional regulator -
  A4W85_RS01430 (A4W85_01390) - 280749..282461 (+) 1713 WP_056947303.1 ABC transporter ATP-binding protein -
  A4W85_RS01435 (A4W85_01395) rcrQ 282465..284258 (+) 1794 WP_251945149.1 ABC transporter ATP-binding protein Regulator
  A4W85_RS01440 (A4W85_01400) - 284435..284911 (-) 477 WP_099947225.1 ATP-binding domain-containing protein -
  A4W85_RS01445 (A4W85_01405) - 284915..285568 (-) 654 WP_099947226.1 UvrD-helicase domain-containing protein -
  A4W85_RS01450 (A4W85_01410) - 285537..286484 (-) 948 WP_099947227.1 UvrD-helicase domain-containing protein -
  A4W85_RS01455 (A4W85_01415) - 286927..287724 (-) 798 WP_056947313.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 66929.96 Da        Isoelectric Point: 5.7995

>NTDB_id=169325 A4W85_RS01435 WP_251945149.1 282465..284258(+) (rcrQ) [Latilactobacillus sakei strain TMW 1.578]
MKEFKRAMVFFYHYLKRYKPSFAIILVMTVFATYLQVKAPEYIGDALNELVKYATKFQVLKAQHLPTSGASKDAFIDVIV
SLVLFYVLSSAATFVSSAAFSRVNALSTNRMRIGLFNKLQKMQIKYFDRHSDGNILSRFTSDLDNIYNAMNQVLSQLVSG
TALLIGLLIMMFRKDTQLAWVTIASVPISFILAWIIINKAQKYVNVQQDEVGKLNGYINEKITGQKVIITNSLQAETIDG
FVEHNESVRKATLKGQIYSGMIFPLMQGMSLVNTAIVIFFGSWLAVNGDIKKSVALGLVVTFVQYSQQFYNQIAQLSSSY
SMIQLAITGARRVNEVFDEDDEIRPTDGQQFNGIERSVTMEHVDFSYLPGKQILHDVNIEVDKGQMIALVGPTGSGKTTV
MNLMNRFYDVDQGAVKIDGVDIRDMDLDTLRSHVGIVLQESVLFAGTIRDNIVFGKPDATDDEVIAAAQQAHIHDFIMTL
EDGYQTKVSEEDNIFSTGQKQLISIARTIITDPALLILDEATSNVDTVTESHIQKAMENVIQGRTSFVIAHRLKTILNAD
RIIVLKDGRIIEEGNHQELLAQEGFYAELYNNQFVFE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=169325 A4W85_RS01435 WP_251945149.1 282465..284258(+) (rcrQ) [Latilactobacillus sakei strain TMW 1.578]
ATGAAAGAATTTAAACGTGCCATGGTCTTTTTCTACCATTATTTAAAACGCTATAAACCATCTTTTGCGATTATCCTTGT
GATGACCGTCTTTGCCACTTATTTACAAGTCAAGGCGCCCGAATATATTGGGGATGCACTGAATGAACTGGTTAAATACG
CCACGAAGTTTCAGGTTTTAAAAGCCCAGCATTTACCAACCAGTGGGGCTTCTAAAGATGCTTTTATTGATGTCATTGTG
TCGTTAGTCCTTTTTTACGTCTTGAGTTCAGCGGCAACTTTTGTCTCAAGCGCCGCTTTTTCACGCGTCAATGCGTTATC
GACCAACCGGATGCGGATTGGGTTATTCAATAAATTACAAAAGATGCAGATTAAATATTTTGACCGCCATTCAGATGGCA
ATATCCTTAGCCGTTTTACGAGTGATTTAGATAATATTTATAACGCGATGAACCAAGTGTTAAGCCAATTGGTGTCGGGG
ACGGCCTTATTGATTGGTTTGCTAATTATGATGTTTAGAAAAGATACCCAATTGGCGTGGGTCACAATCGCGTCAGTGCC
AATTTCGTTTATTTTAGCGTGGATCATTATCAACAAAGCGCAAAAATACGTTAATGTGCAACAAGATGAAGTGGGTAAGT
TAAATGGTTATATCAATGAAAAAATCACAGGTCAAAAAGTGATTATTACCAACAGCCTACAAGCTGAAACGATTGATGGT
TTTGTTGAACATAACGAAAGTGTCCGGAAAGCGACCTTGAAAGGCCAAATTTATTCAGGGATGATTTTCCCATTGATGCA
AGGGATGTCACTGGTTAATACGGCGATCGTGATCTTCTTTGGGAGCTGGCTAGCGGTCAACGGGGATATCAAAAAATCCG
TTGCTTTAGGATTAGTCGTGACTTTCGTGCAATATTCACAACAATTCTATAATCAAATTGCGCAACTCTCATCAAGTTAC
AGCATGATTCAATTGGCAATTACCGGTGCGCGCCGGGTCAACGAAGTCTTTGATGAAGATGATGAAATTCGTCCAACTGA
TGGGCAACAATTCAACGGAATTGAACGTTCAGTAACGATGGAACATGTTGATTTTAGTTACTTACCAGGCAAACAAATCC
TGCACGACGTGAATATTGAGGTTGATAAGGGCCAAATGATTGCGTTGGTTGGACCAACTGGCTCTGGTAAGACGACGGTC
ATGAACTTGATGAACCGGTTCTATGATGTGGATCAAGGCGCCGTTAAGATTGACGGCGTTGATATCCGTGATATGGATTT
GGATACGTTACGGTCACACGTGGGGATTGTTCTTCAAGAATCAGTCTTATTTGCAGGGACGATTCGCGATAACATCGTCT
TTGGAAAACCAGATGCGACTGACGATGAAGTGATTGCAGCGGCGCAACAAGCGCACATTCACGATTTCATAATGACGTTG
GAAGATGGCTATCAAACGAAGGTTAGCGAAGAAGACAACATCTTTAGTACGGGTCAAAAACAATTGATCAGTATTGCGCG
GACGATTATCACGGATCCAGCGCTTTTGATTTTGGATGAAGCAACAAGTAACGTTGATACGGTGACTGAAAGCCATATCC
AAAAAGCAATGGAAAACGTGATTCAGGGTCGGACTAGTTTTGTGATCGCCCATCGCTTGAAAACCATCCTAAATGCGGAT
CGGATTATCGTCTTAAAAGATGGCCGAATTATCGAAGAAGGCAATCATCAAGAATTACTAGCACAAGAAGGCTTCTACGC
AGAATTGTATAACAATCAATTTGTATTTGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(374-523)

ABC transporter transmembrane region (ABC_membrane)

(26-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.632

97.99

0.379