Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A4W84_RS05545 Genome accession   NZ_CP017568
Coordinates   1093667..1095430 (-) Length   587 a.a.
NCBI ID   WP_251908021.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.417     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088667..1100430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W84_RS05525 (A4W84_05440) - 1089464..1090441 (-) 978 WP_041820853.1 alpha-ketoacid dehydrogenase subunit beta -
  A4W84_RS05530 (A4W84_05445) pdhA 1090443..1091552 (-) 1110 WP_250824299.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  A4W84_RS05535 (A4W84_05450) - 1091875..1092558 (-) 684 WP_011374786.1 hypothetical protein -
  A4W84_RS05540 (A4W84_05455) def 1093061..1093618 (+) 558 WP_011374787.1 peptide deformylase -
  A4W84_RS05545 (A4W84_05460) rcrQ 1093667..1095430 (-) 1764 WP_251908021.1 ABC transporter ATP-binding protein Regulator
  A4W84_RS05550 (A4W84_05465) rcrP 1095417..1097156 (-) 1740 WP_011374789.1 ABC transporter ATP-binding protein Regulator
  A4W84_RS05555 (A4W84_05470) - 1097184..1097669 (-) 486 WP_011374790.1 hypothetical protein -
  A4W84_RS05560 (A4W84_05475) - 1097866..1098078 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  A4W84_RS05565 (A4W84_05480) rnjA 1098083..1099771 (+) 1689 WP_011374792.1 ribonuclease J1 -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65086.62 Da        Isoelectric Point: 6.2494

>NTDB_id=169286 A4W84_RS05545 WP_251908021.1 1093667..1095430(-) (rcrQ) [Latilactobacillus sakei strain TMW 1.417]
MKNIKVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDVNLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVVMM
LTINLWMALLSLIMIPTSLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEERAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPADVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMTIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAEAKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=169286 A4W84_RS05545 WP_251908021.1 1093667..1095430(-) (rcrQ) [Latilactobacillus sakei strain TMW 1.417]
ATGAAGAATATTAAGGTGCTCAAACGCCTGATGCGCTATATTGGGCCGTATAAAATAACGTTCTGGTCAGCAATTACTGC
AACGGTGATTTCCGTTTTAGCGAATGCGCTATGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGTTACATTACTAAAGTGATTGCGATGATTCTCAGCTTTGCATTACTTTATCAAACG
ATGATGTTTCTGGGATCGTTTTTAATGACGCGTGCCGTCCAACACGCAATGCGTGATTTACGGCGGGATGTCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGCAATATCTTGTCGCGGGTTACTAATGATGTTGATG
CAATTACCAATGCCTTGCAACAGAGTTTAATCCAAGTGGTGACCTCAATTTTGGGGATCATCATGGCGGTTGTCATGATG
TTGACGATTAATTTATGGATGGCATTACTATCCTTAATTATGATTCCGACCTCACTTTTGATTTCTAAAGCAATCATCAA
AAAGTCACAAGTTTACTTCCAAGGGCAACAAAATACCTTGGGTGAGATGAACGGCTATGTTCAAGAAAACTATGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGAACGAGCAGTTGATGAATTTGCAGCGATTACGGATCGATTGACTGAATTT
GGCTTCAAAGCGGCCTTTATTTCAGGGATTATGATGCCATTAGTGGGTTTGACGACTAACTTGACTTACGCTGGGATGGC
AACCTTGGGTGGTTACTATGTCTTGCACGGTGTCATTACGGTTGGTAACTTGCAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCGATTTCGCAAATCACACAATTATCCGGTGTGATGCAAGCCGCTGCCGCTGCGACACAACGAGTTTTTGAA
ATCTTAGATGAACCGATTGAACCAACTGATCAAGAAACGGCTGAATTACCGGCTGATGTTCAGGGGAAAGTTGAATTTAA
AGATGTCAGCTTTAGCTATGATCCAGCCAAACCGTTGATTCGTGATTTAAGTTTCACTGCTAATCCGGGCGATAAAATTG
CGATTGTTGGGCCAACTGGGGCCGGGAAAACGACGATGATTAATTTATTAATGCGTTTTTACGATGTCAGTTCTGGTCAA
ATCCTGATTGATGGCGTCGATACCCGCCAATTGAGTAAACAGACAGTTCGCTCACTCTTTGGGATGGTGCTGCAGGATGC
TTGGTTGTACCACACAACGATTACGGAAAATATTCGTTTTGGGAAGCTAGATGCCACTGAATATGAAGTCGTGGATGCTG
CCAAAACGGCTAATGTTGATCACTTTATCCATACATTGCCAAATGGCTATCAGATGACAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGACAAAAGCAACTCTTAACGATTGCTCGGGCAGTGATTGCTAATCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCAGTCGATACGCGCTTAGAAAGCTTATTACAAAAGGCGATGGAAAAAGTGATGCAAGGACGAACAAGCTTTG
TGATTGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTGATGGATCACGGTCAAATTGTTGAAAAAGGA
ACGCATGATGACTTATTAGCCGCTAATGGTGTTTATGCTAAGCTTTATAACAGTCAATTTGCAGAAGCAAAATTAAATGC
ATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-297)

ABC transporter (ABC_tran)

(361-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.687

100

0.428

Multiple sequence alignment