Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A4W84_RS01460 Genome accession   NZ_CP017568
Coordinates   292066..293859 (+) Length   597 a.a.
NCBI ID   WP_251908128.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.417     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 287066..298859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W84_RS01440 (A4W84_01400) rpsN 287575..287844 (+) 270 WP_025016208.1 30S ribosomal protein S14 -
  A4W84_RS01445 (A4W84_01405) - 288318..289484 (+) 1167 WP_076981516.1 multidrug effflux MFS transporter -
  A4W84_RS01450 (A4W84_01410) - 289537..290208 (-) 672 WP_076631969.1 TetR/AcrR family transcriptional regulator -
  A4W84_RS01455 (A4W84_01415) - 290351..292062 (+) 1712 Protein_292 ABC transporter ATP-binding protein -
  A4W84_RS01460 (A4W84_01420) rcrQ 292066..293859 (+) 1794 WP_251908128.1 ABC transporter ATP-binding protein Regulator
  A4W84_RS01465 (A4W84_01425) - 294036..295481 (-) 1446 WP_056947307.1 UvrD-helicase domain-containing protein -
  A4W84_RS01470 (A4W84_01430) - 295502..295936 (-) 435 WP_056947310.1 hypothetical protein -
  A4W84_RS01475 (A4W84_01435) - 296379..297176 (-) 798 WP_056947313.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 66904.07 Da        Isoelectric Point: 5.9251

>NTDB_id=169243 A4W84_RS01460 WP_251908128.1 292066..293859(+) (rcrQ) [Latilactobacillus sakei strain TMW 1.417]
MKEFKRAMVFFYHYLKRCKPSFAIILVMTVFATYLQVKAPEYIGDALNELVKYATKFQVLKAQHLPTSGASKDAFIDVIV
LLVLFYVLSSAATFVSSAAFSRVNALSTNRMRIGLFNKLQKMQIKYFDRHSDGDILSRFTSDLDNIYNAMNHVLSQLVSG
TALLIGLLIMMFRKDTQLAWVTIASVPISFILAWIIIIKAQKYVNVQQDEVGKLNGYINEKITGQKVIITNSLQAETIDG
FVEHNESVRKATLKGQIYSGMIFPLMQGMSLVNTAIVIFFGSWLAVNGDIKKSVALGLVVTFVQYSQQFYNQIAQLSSSY
SMIQLAITGARRVNEVFDEDDEIRPTNGQQFNGIERSVTMEHVDFSYLPGKQILHDVNIEVDKGQMIALVGPTGSGKTTV
MNLMNRFYDVDQGAVKIDGVDIRDMDLDTLRSHVGIVLQESVLFAGTIRDNIVFGKPDATDDEVIAAAQQAHIHDFIMTL
EDGYQTKVSEEDNIFSTGQKQLISIARTIITDPALLILDEATSNVDTVTESHIQKAMENVIQGRTSFVIAHRLKTILNAD
RIIVLKDGRIIEEGNHQELLAQEGFYAELYNNQFVFE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=169243 A4W84_RS01460 WP_251908128.1 292066..293859(+) (rcrQ) [Latilactobacillus sakei strain TMW 1.417]
ATGAAAGAATTTAAACGTGCCATGGTCTTTTTCTACCATTATTTAAAACGCTGTAAACCATCTTTTGCGATTATCCTCGT
GATGACCGTCTTTGCCACTTATTTACAAGTCAAGGCGCCCGAATATATTGGGGATGCACTGAATGAATTGGTTAAATACG
CCACGAAGTTTCAGGTTTTAAAAGCCCAACATTTACCAACCAGTGGGGCTTCTAAAGATGCTTTTATTGATGTCATTGTG
TTGTTAGTCCTTTTTTACGTCTTGAGTTCAGCGGCGACCTTTGTCTCAAGTGCCGCCTTTTCACGCGTCAATGCGTTATC
GACCAACCGGATGCGGATTGGGTTATTCAATAAATTACAAAAGATGCAGATTAAATATTTTGACCGCCATTCAGATGGCG
ATATCCTTAGCCGTTTTACGAGTGATTTAGATAATATTTATAACGCGATGAACCATGTGTTAAGCCAATTGGTGTCGGGG
ACGGCCTTATTGATTGGTTTGCTAATTATGATGTTTAGAAAAGATACCCAATTGGCGTGGGTCACAATCGCGTCAGTGCC
AATTTCGTTTATTTTAGCGTGGATCATTATCATCAAAGCGCAAAAATACGTTAACGTGCAACAAGATGAAGTGGGTAAGT
TAAATGGTTATATCAATGAAAAAATCACAGGTCAAAAAGTGATTATTACCAACAGCCTACAAGCTGAAACGATTGATGGT
TTTGTTGAACATAACGAAAGTGTCCGGAAAGCGACCTTGAAAGGCCAAATTTATTCAGGGATGATTTTCCCATTGATGCA
AGGGATGTCACTGGTTAATACGGCGATCGTGATTTTCTTTGGGAGCTGGCTAGCGGTCAATGGGGATATTAAAAAATCCG
TTGCTTTAGGGTTAGTCGTAACTTTCGTGCAATACTCACAACAATTCTATAATCAAATTGCGCAACTCTCATCAAGTTAC
AGCATGATTCAATTAGCAATTACCGGTGCACGCCGGGTCAACGAAGTCTTTGATGAAGATGATGAGATTCGTCCAACTAA
TGGGCAACAATTCAACGGGATTGAACGTTCAGTAACGATGGAACATGTTGATTTTAGCTACTTACCAGGCAAACAAATCC
TGCACGACGTGAATATCGAGGTTGATAAGGGCCAAATGATTGCGTTGGTTGGACCAACTGGCTCTGGGAAAACGACGGTC
ATGAACTTGATGAACCGGTTCTATGATGTGGATCAAGGCGCCGTTAAGATTGACGGCGTTGATATCCGTGACATGGATTT
GGATACGTTACGGTCACATGTGGGGATTGTTCTTCAAGAATCAGTCTTATTTGCAGGGACGATTCGCGATAACATTGTCT
TTGGAAAACCAGATGCGACTGATGATGAAGTGATTGCAGCGGCGCAACAAGCGCACATTCACGATTTCATCATGACGTTG
GAAGATGGCTATCAAACGAAGGTTAGCGAAGAAGATAATATCTTCAGTACGGGTCAAAAACAATTGATCAGTATTGCGCG
GACGATTATTACGGATCCAGCGCTTTTGATTTTGGATGAAGCAACAAGTAACGTTGATACGGTGACTGAAAGCCATATCC
AAAAAGCAATGGAAAATGTGATTCAGGGACGGACCAGTTTTGTAATCGCCCATCGCTTGAAAACCATCTTAAATGCGGAT
CGGATTATCGTCTTAAAAGATGGCCGAATTATCGAAGAAGGCAATCATCAAGAATTACTAGCACAAGAAGGCTTCTACGC
AGAATTGTATAACAATCAATTTGTATTTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(25-311)

ABC transporter (ABC_tran)

(374-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.737

98.157

0.38